View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_17 (Length: 423)
Name: NF9853_low_17
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 167 - 404
Target Start/End: Complemental strand, 34252453 - 34252216
Alignment:
| Q |
167 |
ttacctcatctgcatatttctctctcaacaaaaaatagttacatgtattattaacaaaaccacagctaatatatctttataaaagtgacagttgaaaagg |
266 |
Q |
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| T |
34252453 |
ttacctcatccgcatatttctctctcagcagtaaatagttacatgtattattaacaaaaccacagctaatatagctttataaaagtgtcagttgaaaagg |
34252354 |
T |
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| Q |
267 |
aacgaaaggatgtgttgtgtgaatttcaccactaggctttgtagaaagggaaaaaatgggagtaaatatgagaatgctatgttgtctaaccccaaataga |
366 |
Q |
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| T |
34252353 |
aaagaaaggatgtgttgtgttaatttcgccactaggctttgtagaaaggggtaaaaagggagtaaatatgaaaatgttacatcatctaacccccaataga |
34252254 |
T |
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| Q |
367 |
aaaagcatacaatgtctaagaaagaaattataccatcc |
404 |
Q |
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| T |
34252253 |
aaaagcatacaatgtctaagaaagaacttataccatcc |
34252216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 34252566 - 34252453
Alignment:
| Q |
1 |
aactcaacaatatagcttagttacaatttacaacttgtccaatcaactactccctccgttcctttctagtttcttgtaaggccatttgcacatattaata |
100 |
Q |
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| T |
34252566 |
aactcaacaagagagcttagttacaacttacaacttgtccaatcaactactccctccgttcctttctagtttcttttaaggccatttacacatactaaga |
34252467 |
T |
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| Q |
101 |
aaaccaataaactt |
114 |
Q |
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| T |
34252466 |
aaaccaataaactt |
34252453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 402
Target Start/End: Complemental strand, 34261968 - 34261891
Alignment:
| Q |
324 |
gggagtaaatatgagaatgctatgttgtctaaccccaaatagaaaaagcatacaatgtctaagaaagaaattataccat |
402 |
Q |
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||||||||||| |||||||||| |||||||||||| || ||||||| |||||||||| ||||||||| || |||||| |
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| T |
34261968 |
gggagtaaataggagaatgctacattgtctaacccc-aagagaaaaaacatacaatgtaaaagaaagaacttgtaccat |
34261891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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