View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_19 (Length: 394)
Name: NF9853_low_19
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 36191798 - 36192154
Alignment:
| Q |
20 |
cacaaaaagtagagagaattctctgattttaaattttcacagcgattccactggttcggaatctc-----------agcataaaaatggcaatcccaaag |
108 |
Q |
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| T |
36191798 |
cacaaaaaatagagagaattctctgattttaaattttcacagcgattccactggttcggaatctctcagcaaaaaaatcataaaaatggcaattccaaag |
36191897 |
T |
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| Q |
109 |
tatataaaacacaagtttgactggcttgcctataagagaaaaatagatactacaagatgatagacggtccaaaaggcaaacagaaattctaaactaagtt |
208 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
36191898 |
tatataaaacacaagtttaactgccttgcctataagagaaaaatggacactacaagatgatacacagtccaaaaggcaaacaaaaattctaaactaagtt |
36191997 |
T |
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| Q |
209 |
gcagataacaacataagataaaagtggtgttatcaccttttgagaagatattatgttttccagctgcaactaataactatgattgaatgaatgtagggga |
308 |
Q |
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| T |
36191998 |
gcagataacaac-----ataaaagtggccttatcaccttttgagaagatattatgttttccagctgcgactaataactatgat----tgaatgtagggga |
36192088 |
T |
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| Q |
309 |
cggaaacaataatttcatgcaatagtttaaacctcattattacacaagttacctgaaatacgtcag |
374 |
Q |
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| T |
36192089 |
cggaaacaataatttcatgcaatagtttaaacctcattattacacaagttacctgaaatacgtcag |
36192154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 32654242 - 32654455
Alignment:
| Q |
20 |
cacaaaaagtagagagaattctctgattttaaattttcacagcgattccactggttcggaatctcagca---------taaaaatggcaatcccaaagta |
110 |
Q |
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| T |
32654242 |
cacaaaaaatagagagaattctctgattttaaattttcacagcgattccactggttcgtaatctaagcaaaaaaatcataaaaatggcaatcccaaagta |
32654341 |
T |
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| Q |
111 |
tataaaacacaagtttgactggcttgcctataagagaaaaatagatactacaagatgatagacggtccaaaaggcaaacagaaattctaaactaagttgc |
210 |
Q |
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| T |
32654342 |
tataaaacacaagtttgactgccttgcctataagagaaaaatagatactacaagatgatagacggtccaaaaggcaaacagaaattctaaactaagttgc |
32654441 |
T |
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| Q |
211 |
agataacaacataa |
224 |
Q |
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|||||||||||||| |
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| T |
32654442 |
agataacaacataa |
32654455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 241 - 374
Target Start/End: Complemental strand, 5055467 - 5055338
Alignment:
| Q |
241 |
tcaccttttgagaagatattatgttttccagctgcaactaataactatgattgaatgaatgtaggggacggaaacaataatttcatgcaatagtttaaac |
340 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5055467 |
tcaccttttgagaagatattatgttttccagctgcgactaataactatgattgaatg----taggggacggaaacaataatttcatgcaatagtttaaac |
5055372 |
T |
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| Q |
341 |
ctcattattacacaagttacctgaaatacgtcag |
374 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
5055371 |
ctcaatattacacaagttacctgaaatacgtcag |
5055338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 5055631 - 5055509
Alignment:
| Q |
33 |
gagaattctctgattttaaattttcacagcgattccactggttcggaatctc-----------agcataaaaatggcaatcccaaagtatataaaacaca |
121 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||| ||||||||||||||||||| |
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| T |
5055631 |
gagaattctaggattttaaattttcacagcgattccacaggtttggaatctctcagcaaaacaatcataaaaatggcaattccaaagtatataaaacaca |
5055532 |
T |
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| Q |
122 |
agtttgactggcttgcctataag |
144 |
Q |
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|||||||||| | |||||||||| |
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| T |
5055531 |
agtttgactgccatgcctataag |
5055509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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