View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9853_low_2 (Length: 773)

Name: NF9853_low_2
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9853_low_2
NF9853_low_2
[»] chr6 (22 HSPs)
chr6 (338-763)||(14606160-14606608)
chr6 (190-301)||(14606006-14606117)
chr6 (126-229)||(8848035-8848140)
chr6 (128-186)||(23094608-23094666)
chr6 (125-186)||(19382994-19383055)
chr6 (128-187)||(14603975-14604034)
chr6 (128-186)||(19214781-19214839)
chr6 (128-186)||(21393426-21393484)
chr6 (125-186)||(2666141-2666202)
chr6 (129-186)||(17724581-17724638)
chr6 (129-186)||(23160780-23160837)
chr6 (130-186)||(19002769-19002825)
chr6 (128-186)||(15907093-15907151)
chr6 (190-264)||(31872998-31873072)
chr6 (128-186)||(32616898-32616956)
chr6 (190-229)||(23097045-23097084)
chr6 (128-186)||(8909966-8910024)
chr6 (128-186)||(21683171-21683229)
chr6 (128-186)||(31877213-31877271)
chr6 (211-264)||(7463214-7463267)
chr6 (128-185)||(14603728-14603785)
chr6 (129-186)||(17102635-17102692)
[»] chr7 (7 HSPs)
chr7 (51-186)||(10206659-10206794)
chr7 (130-186)||(9456941-9456997)
chr7 (136-186)||(48644159-48644209)
chr7 (128-186)||(18535662-18535721)
chr7 (190-228)||(45623332-45623370)
chr7 (141-186)||(27258279-27258324)
chr7 (141-186)||(39703138-39703183)
[»] chr8 (10 HSPs)
chr8 (190-290)||(44970779-44970879)
chr8 (338-434)||(44970646-44970742)
chr8 (130-186)||(23120522-23120578)
chr8 (125-186)||(508262-508323)
chr8 (95-186)||(22216423-22216514)
chr8 (128-186)||(8223730-8223788)
chr8 (130-180)||(21349404-21349454)
chr8 (126-159)||(23126932-23126965)
chr8 (190-255)||(40388059-40388123)
chr8 (129-186)||(45537326-45537383)
[»] chr5 (12 HSPs)
chr5 (190-290)||(35332549-35332649)
chr5 (338-434)||(35332415-35332511)
chr5 (127-186)||(22362557-22362616)
chr5 (125-186)||(21112711-21112772)
chr5 (128-186)||(42883073-42883131)
chr5 (127-180)||(27032680-27032733)
chr5 (129-186)||(38925437-38925494)
chr5 (190-264)||(11350652-11350726)
chr5 (80-158)||(28256327-28256405)
chr5 (190-228)||(32723804-32723842)
chr5 (141-186)||(29391378-29391423)
chr5 (129-186)||(35328810-35328867)
[»] chr3 (15 HSPs)
chr3 (48-164)||(48119686-48119802)
chr3 (125-186)||(9767929-9767990)
chr3 (125-186)||(46124028-46124089)
chr3 (128-186)||(11028072-11028129)
chr3 (128-186)||(15212737-15212795)
chr3 (128-186)||(15251956-15252014)
chr3 (128-186)||(22155376-22155434)
chr3 (92-159)||(1136157-1136224)
chr3 (125-187)||(53157278-53157340)
chr3 (129-186)||(21972645-21972702)
chr3 (129-186)||(21995076-21995133)
chr3 (129-186)||(41935243-41935300)
chr3 (128-186)||(6079879-6079937)
chr3 (124-186)||(24552581-24552643)
chr3 (124-186)||(24558720-24558782)
[»] chr1 (9 HSPs)
chr1 (90-186)||(41476035-41476131)
chr1 (128-186)||(15723291-15723349)
chr1 (190-264)||(15847375-15847449)
chr1 (190-255)||(48278551-48278616)
chr1 (129-184)||(2248044-2248099)
chr1 (190-264)||(18509577-18509651)
chr1 (128-186)||(44201672-44201730)
chr1 (125-186)||(46123005-46123066)
chr1 (128-187)||(19193807-19193866)
[»] scaffold0553 (1 HSPs)
scaffold0553 (124-186)||(6549-6611)
[»] chr2 (7 HSPs)
chr2 (124-186)||(2707131-2707193)
chr2 (124-186)||(31898581-31898643)
chr2 (129-186)||(45073808-45073861)
chr2 (128-186)||(24863912-24863970)
chr2 (128-186)||(25417080-25417138)
chr2 (124-168)||(39907536-39907580)
chr2 (128-186)||(24079509-24079567)
[»] scaffold0072 (1 HSPs)
scaffold0072 (125-186)||(46284-46345)
[»] scaffold0337 (1 HSPs)
scaffold0337 (128-186)||(789-847)
[»] scaffold0281 (1 HSPs)
scaffold0281 (124-183)||(4583-4642)
[»] scaffold0077 (1 HSPs)
scaffold0077 (128-186)||(52538-52596)
[»] chr4 (6 HSPs)
chr4 (129-186)||(43593847-43593904)
chr4 (125-186)||(35577352-35577413)
chr4 (95-160)||(51033336-51033401)
chr4 (128-186)||(16612222-16612280)
chr4 (128-186)||(18811327-18811385)
chr4 (128-186)||(50377326-50377384)
[»] scaffold0164 (2 HSPs)
scaffold0164 (134-185)||(5207-5257)
scaffold0164 (190-229)||(33866-33905)
[»] scaffold0214 (2 HSPs)
scaffold0214 (190-228)||(11573-11611)
scaffold0214 (190-228)||(25873-25911)
[»] scaffold0179 (1 HSPs)
scaffold0179 (124-186)||(28438-28500)
[»] scaffold0039 (1 HSPs)
scaffold0039 (128-186)||(102232-102290)
[»] scaffold2142 (1 HSPs)
scaffold2142 (210-255)||(395-440)
[»] scaffold0086 (1 HSPs)
scaffold0086 (124-165)||(42469-42510)
[»] scaffold0061 (2 HSPs)
scaffold0061 (190-239)||(1634-1683)
scaffold0061 (190-239)||(7145-7194)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 338 - 763
Target Start/End: Original strand, 14606160 - 14606608
Alignment:
Q  338 ctgctaaaagtacagtacaatttaatttaaaaatattgtacataaccaataaacttccgcaatattgataagaacttcagttcgagagaaaccgcaatat 437  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  14606160 ctgctaaaagtacagtacaatttaatttaaaaatattgtacatagccaataaacttccgcaatattgatcagaacttcagtttgagagaaaccgcaatat 14606259  T
Q  438 tgatcagacctcaaattatcaatgaatgagttttctatgtatt-ctgaagttttatt-tttgttctcgtatttgattactaatcttggaaaattattatt 535  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14606260 tgatcagacctcaaattatcaatgaatgagttttcaatgtattcctgaagttttattgtttgttctcgtatttgattactaatcttggaaaattattatt 14606359  T
Q  536 gatttatcaaaattccttgacaat--------------------caccttgacatgtttgaaatcaatacattgctttattaatttaagctcgagtcaag 615  Q
    |||||||||||| |||||||||||                    |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  14606360 gatttatcaaaaatccttgacaattctaactataaaactggttacaccatgaaatgtttgaaatcaatacattgctttattaatttaagctcgactcaag 14606459  T
Q  616 atttgctattttcgactttatctcatagcttactctcacatgaagtctcttgcct-ccttgcctttgatatttcacaaataaggacaatcttcgaaaata 714  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  14606460 atttgctattttcaactttatctcatagcttactctcacatgaattctcttgcctacattgcctttgatatttcacaaataaggacaatcttcggaaata 14606559  T
Q  715 ttaagactacacggcgaccattgcatatgattcacgttgcctgcctatg 763  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14606560 ttaagactacacggcgaccattgcatatgattcacgttgcctgcctatg 14606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 14606006 - 14606117
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaacctacaacatatgcaagttgtcaca 289  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||  ||||||||||    
T  14606006 ttaataaaggcaatacatgcttttgctgtagcctatttttattgcctaaaatacccttgacaatttttattttaacctgcaacatatggtagttgtcaca 14606105  T
Q  290 agtcacaactat 301  Q
    ||||||||||||    
T  14606106 agtcacaactat 14606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 8848140 - 8848035
Alignment:
Q  126 tacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt-cct-ttaataaaggcaatac-atgcttttggtgtagcc 222  Q
    |||||||||||||| ||||||||||||||||||| ||||||||  || ||||||||||||| ||| ||||||||||||||||  | ||||||||||||||    
T  8848140 tacgttagcgcagtagaaaaagcggacagacgggcacgggagt-gccctctggacgctagtacctattaataaaggcaatacttttcttttggtgtagcc 8848042  T
Q  223 tattttt 229  Q
    | |||||    
T  8848041 ttttttt 8848035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 23094608 - 23094666
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  23094608 cgttagcgcagtagaaagagcggacagacgggaacgggagtatccgtttggacgctagt 23094666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 19382994 - 19383055
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  19382994 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 19383055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 14603975 - 14604034
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagtc 187  Q
    |||||||||||| ||||||| ||||||||||| ||||||||  |||||||||||||||||    
T  14603975 cgttagcgcagtagaaaaagtggacagacgggtacgggagtgcccgtctggacgctagtc 14604034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 19214839 - 19214781
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||| || ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  19214839 cgttagcgcggtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 19214781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 21393426 - 21393484
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  21393426 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 21393484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 2666141 - 2666202
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||  ||||||||| ||||||    
T  2666141 atacgttagcgcagtagaaaaaacggacagacgggcacgggagtgcccgtctggatgctagt 2666202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 17724581 - 17724638
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||||    
T  17724581 gttagcgcagtagaaaaagcggacagacgggcatgggagtgcccgtctggacgctagt 17724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 23160780 - 23160837
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  23160780 gttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 23160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 19002769 - 19002825
Alignment:
Q  130 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||| || ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  19002769 ttagcgcggtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagt 19002825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 15907093 - 15907151
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| ||||||||  |||||| |||||||||    
T  15907093 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagt 15907151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 31872998 - 31873072
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 264  Q
    |||||||||| || |||||  |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  31872998 ttaataaaggaaaaacatggatttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 31873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 32616956 - 32616898
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||| ||| ||||||||||||||||||| ||||||||  ||||||||||| ||||    
T  32616956 cgttagcgtagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgttagt 32616898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 23097084 - 23097045
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctattttt 229  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  23097084 ttaataaaggcaatacttgattttggtgtagcctattttt 23097045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 8909966 - 8910024
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||| ||||||| |||||||||| |||||||| ||| ||||  ||||||||||||||||    
T  8909966 cgtttgcgcagtagaaaaagcgggcagacgggcacgagagtgcccgtctggacgctagt 8910024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 21683229 - 21683171
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||| | |||| |||||||||||||| ||||||||  ||||||| ||||||||    
T  21683229 cgttagcgcaatagaaagagcggacagacgggcacgggagtgcccgtctgaacgctagt 21683171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 31877213 - 31877271
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||  ||||||||  | ||||||||||||||    
T  31877213 cgttagcgcagtagaaagagcggacagacggatacgggagtgccggtctggacgctagt 31877271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 7463267 - 7463214
Alignment:
Q  211 tttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 264  Q
    |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  7463267 tttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 7463214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 14603785 - 14603728
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctag 185  Q
    |||||| ||||| ||||||||||||||||||| || |||||  |||||| ||||||||    
T  14603785 cgttagtgcagtagaaaaagcggacagacgggcaccggagtggccgtcttgacgctag 14603728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 17102635 - 17102692
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||| |||| |||||||||| ||| | ||||||  ||||||||||||||||    
T  17102635 gttagcgcagtagaaagagcggacagatgggcatgggagtgcccgtctggacgctagt 17102692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 10206794 - 10206659
Alignment:
Q  51 cctatcaattgtgtaatttgtaaatagttaaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcgg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10206794 cctatcaattgtgtaatttgtaaatagttaaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcgg 10206695  T
Q  151 acagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||| |||| |||  | ||||||||||||||    
T  10206694 acagacgggcacggaagtgccggtctggacgctagt 10206659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 9456997 - 9456941
Alignment:
Q  130 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||| | ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  9456997 ttagcgcaatagaaaaagcggacagacgggtacgggagtgtccgtctagacgctagt 9456941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 48644159 - 48644209
Alignment:
Q  136 cagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||| ||||||||||||||||||| ||| |||| |||||||||||||||||    
T  48644159 cagtagaaaaagcggacagacgggcacgagagtgtccgtctggacgctagt 48644209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 18535721 - 18535662
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacaga-cgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||| |||| ||||||||  ||||||||||||||||    
T  18535721 cgttagcgcagtagaaagagcggacagaccgggcacgggagtgcccgtctggacgctagt 18535662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 45623332 - 45623370
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttt 228  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  45623332 ttaataaaggcaatactttcttttggtgtagcctatttt 45623370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 27258324 - 27258279
Alignment:
Q  141 gaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||||||| ||| |||| |||||||||| ||||||    
T  27258324 gaaaaagcggacagacgggcacgagagtgtccgtctggatgctagt 27258279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 39703138 - 39703183
Alignment:
Q  141 gaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  39703138 gaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 39703183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 44970879 - 44970779
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaacctacaacatatgcaagttgtcaca 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  44970879 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatacccttgacagtttttattttaacctacaacatatgcaagctgtcaca 44970780  T
Q  290 a 290  Q
    |    
T  44970779 a 44970779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 44970742 - 44970646
Alignment:
Q  338 ctgctaaaagtacagtacaatttaatttaaaaatattgtacataaccaataaacttccgcaatattgataagaacttcagttcgagagaaaccgcaa 434  Q
    |||||||||||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  44970742 ctgctaaaagtacaatacaatttaattaaaaaatattttacatagccaataaacttccgcaatattgatcagaacttcagtttgagagaaactgcaa 44970646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 23120578 - 23120522
Alignment:
Q  130 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  23120578 ttagcgcagtagaaaaagcggacagatgggcacgggagtgtccgtctggacgctagt 23120522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 508323 - 508262
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||||||  |||| ||||||||||||| ||| ||||  ||||||||||||||||    
T  508323 atacgttagcgcagtaaaaaatgcggacagacgggcacgagagtgcccgtctggacgctagt 508262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 22216514 - 22216423
Alignment:
Q  95 ttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||| ||| ||| ||||||||||  |  |||||||||||||| | |||||| ||||||||| |  ||||||||  ||||||||||||||||    
T  22216514 ttatacaaaaaaatataatcaaatacatacatacgttagcgcaatagaaaaaacggacagacagatacgggagtgcccgtctggacgctagt 22216423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 8223788 - 8223730
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||| ||||| |||| |||||||||| ||| ||||||||  ||||||||||||||||    
T  8223788 cgttagtgcagtagaaagagcggacagaagggcacgggagtgcccgtctggacgctagt 8223730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 21349454 - 21349404
Alignment:
Q  130 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggac 180  Q
    |||||||||| |||| |||||||||||||| |||||||| | |||||||||    
T  21349454 ttagcgcagtagaaagagcggacagacgggcacgggagtgtacgtctggac 21349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 23126932 - 23126965
Alignment:
Q  126 tacgttagcgcagtggaaaaagcggacagacggg 159  Q
    |||||||||||||| |||||||||||||||||||    
T  23126932 tacgttagcgcagtagaaaaagcggacagacggg 23126965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 40388059 - 40388123
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagttt 255  Q
    |||||||||||||||| |  ||| |||||||| |||||||| | ||||||||| ||||||||||||    
T  40388059 ttaataaaggcaatacttagtttaggtgtagcttatttttacttcctaaaata-ccttgacagttt 40388123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 45537326 - 45537383
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||| || ||||||||| ||||||||| || |||||  ||||||||||||||||    
T  45537326 gttagcgcggtagaaaaagcgaacagacgggcacaggagtgcccgtctggacgctagt 45537383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 35332649 - 35332549
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaacctacaacatatgcaagttgtcaca 289  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  35332649 ttaataaaggcaatacatgcttttagtgtagcctatttttattgcctaaaatacccttgacagtttttattttaacctacaacatatgcaagctgtcaca 35332550  T
Q  290 a 290  Q
    |    
T  35332549 a 35332549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 35332511 - 35332415
Alignment:
Q  338 ctgctaaaagtacagtacaatttaatttaaaaatattgtacataaccaataaacttccgcaatattgataagaacttcagttcgagagaaaccgcaa 434  Q
    |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  35332511 ctgctaaaagtacaatacaatttaattaaaaaatattgtacatagccaataaacttccgcaatattgatcagaacttcagtttgagagaaactgcaa 35332415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 22362616 - 22362557
Alignment:
Q  127 acgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  22362616 acgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 22362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 21112772 - 21112711
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||| |||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  21112772 atacgttatcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 21112711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 42883073 - 42883131
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||  ||| |||||||||||||| ||||||||  ||||||||||||||||    
T  42883073 cgttagcgcagtaaaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 42883131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 27032680 - 27032733
Alignment:
Q  127 acgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggac 180  Q
    ||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||    
T  27032680 acgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggac 27032733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 38925494 - 38925437
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||| ||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  38925494 gttagcgtagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 38925437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 11350726 - 11350652
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 264  Q
    ||||||| ||||| |||||  |||| ||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  11350726 ttaataatggcaaaacatgaatttgatgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 11350652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 28256405 - 28256327
Alignment:
Q  80 aaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgg 158  Q
    ||||| |||||||| ||||| ||| ||||||||| ||||   | ||| |||||||||||| |||| |||||||||||||    
T  28256405 aaatttaaatcaaaattatacaaacaaaaataataaaataatcacatgcgttagcgcagtagaaagagcggacagacgg 28256327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 32723804 - 32723842
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttt 228  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  32723804 ttaataaagacaatacatgcttttggtgtagcatatttt 32723842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 29391378 - 29391423
Alignment:
Q  141 gaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||| ||||| |||||||| |||||||||||| ||||    
T  29391378 gaaaaagcggacaaacgggcacgggagtgtccgtctggacgatagt 29391423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 35328867 - 35328810
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||| |||| |||||||||||||| ||| || |  ||||||||||||||||    
T  35328867 gttagcgcagtagaaagagcggacagacgggcacgtgaatgcccgtctggacgctagt 35328810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 48119686 - 48119802
Alignment:
Q  48 atccctatcaattgtgtaatttgtaaatagttaaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaag 147  Q
    |||||||||||||||||||| | ||||||||||| |||||| ||| |||||| ||||||||||||||||||| |||||||| |||||||| | |||||||    
T  48119686 atccctatcaattgtgtaatctataaatagttaacttcaaaccaatcttatacaaagaaaaataatcaaatcaacgcatacattagcgcaatagaaaaag 48119785  T
Q  148 cggacagacgggaacgg 164  Q
    |||||||||||| ||||    
T  48119786 cggacagacgggcacgg 48119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 9767929 - 9767990
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  9767929 atacgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 9767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 46124089 - 46124028
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||  ||||||| ||||||||    
T  46124089 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctgaacgctagt 46124028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 11028129 - 11028072
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  11028129 cgttagcgcagtagaaaaagcggacagacgggcacgggagt-gccgtctggacgctagt 11028072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 15212795 - 15212737
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| ||||||||||||||||||| ||||||||  || |||||||||||||    
T  15212795 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagt 15212737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 15252014 - 15251956
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| ||||||||||||||||||| ||||||||  || |||||||||||||    
T  15252014 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagt 15251956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 22155434 - 22155376
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||| ||| |||||| |||||||||||| |||||||| |||||||||||||||||    
T  22155434 cgttagcgtagtagaaaaaacggacagacgggcacgggagtgtccgtctggacgctagt 22155376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 1136224 - 1136157
Alignment:
Q  92 aacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacggg 159  Q
    |||||||| ||||||| ||||| || | || ||||||||||||||||| |||||| ||||||||||||    
T  1136224 aacttatacaaagaaacataattaagtatatgcatacgttagcgcagtagaaaaaacggacagacggg 1136157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 53157340 - 53157278
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagtc 187  Q
    |||| |||||||||| |||| |||||||||||||| ||| ||||  |||||||||||||||||    
T  53157340 atacattagcgcagtagaaagagcggacagacgggcacgagagtgcccgtctggacgctagtc 53157278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 21972702 - 21972645
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  21972702 gttagcgtagtagaaaaagcggacaaacgggcacgggagtgcccgtctggacgctagt 21972645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 21995133 - 21995076
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  21995133 gttagcgtagtagaaaaagcggacaaacgggcacgggagtgcccgtctggacgctagt 21995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 41935243 - 41935300
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||| |||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  41935243 gttaacgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 41935300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 6079879 - 6079937
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| ||||||||||||||||||| |||| |||  | ||||| ||||||||    
T  6079879 cgttagcgcagtagaaaaagcggacagacgggcacggaagtgccggtctgaacgctagt 6079937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 24552643 - 24552581
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||| |||||||||| |||||||| |||||||||  ||  |||| |||||||||||||||||    
T  24552643 catactttagcgcagtagaaaaagcagacagacggacacatgagtgtccgtctggacgctagt 24552581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 24558782 - 24558720
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||| |||||||||| |||||||| |||||||||  ||  |||| |||||||||||||||||    
T  24558782 catactttagcgcagtagaaaaagcagacagacggacacaagagtgtccgtctggacgctagt 24558720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 41476035 - 41476131
Alignment:
Q  90 caaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||| | ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||  |||||||| |||||||| ||||||||    
T  41476035 caaacttataaatagaaaaataatcaaatcaacgcatacgttagtgcagtagaaaaagcggacagatggacacgggagtgtccgtctgaacgctagt 41476131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 15723291 - 15723349
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  15723291 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 15723349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 15847449 - 15847375
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 264  Q
    ||||||||||||| |||||  |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  15847449 ttaataaaggcaaaacatggatttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 15847375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 48278551 - 48278616
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagttt 255  Q
    |||||||||||||||| |  |||| |||||||||||||||| | ||||||||| ||||||||||||    
T  48278551 ttaataaaggcaatacttaattttcgtgtagcctatttttacttcctaaaatacccttgacagttt 48278616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 2248099 - 2248044
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgcta 184  Q
    ||||||||||| |||| |||||||||||||  |||||||| |||||||||||||||    
T  2248099 gttagcgcagtagaaagagcggacagacggacacgggagtgtccgtctggacgcta 2248044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 18509651 - 18509577
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 264  Q
    ||||||||||||| ||||   |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  18509651 ttaataaaggcaaaacatagatttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 18509577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 44201672 - 44201730
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| ||||||||  |||||| |||||||||    
T  44201672 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagt 44201730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 46123005 - 46123066
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||||||  |||| ||| ||||||||| ||||||||  ||||||||||||||||    
T  46123005 atacgttagcgcagtaaaaaatgcgaacagacgggcacgggagtgcccgtctggacgctagt 46123066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 19193807 - 19193866
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagtc 187  Q
    |||||||||||| |||| ||||||||||| || || |||||  |||||||||||||||||    
T  19193807 cgttagcgcagtagaaagagcggacagacaggcacaggagtgcccgtctggacgctagtc 19193866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 6611 - 6549
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  6611 catacgttagcgcagtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagt 6549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 2707131 - 2707193
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  2707131 catacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 2707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 31898581 - 31898643
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||  ||||||||||||||||    
T  31898581 catacgttagcgcagtagaaagagcggatagacgggcacgggagtgcccgtctggacgctagt 31898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 45073861 - 45073808
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||    
T  45073861 gttagcgcagtggaaaaagcggacagacgggcacgggagt----gtctggacgctagt 45073808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 24863970 - 24863912
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||||||||||||||| || ||| ||||  ||||||||||||||||    
T  24863970 cgttagcgcagtagaaaaagcggacagacaggcacgagagtgcccgtctggacgctagt 24863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 25417138 - 25417080
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| || ||||| ||| |||||||||||||    
T  25417138 cgttagcgcagtagaaagagcggacagacgggcacaggagtgtccatctggacgctagt 25417080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 39907536 - 39907580
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagt 168  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||    
T  39907536 catacgttagcgcagtagaaaaaacggacaaacgggaacgggagt 39907580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 24079509 - 24079567
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||  ||||||||  | ||||||||||||||    
T  24079509 cgttagcgcagtagaaagagcggacagacggacacgggagtgcctgtctggacgctagt 24079567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 46345 - 46284
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  46345 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 46284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 789 - 847
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  789 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 4583 - 4642
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgct 183  Q
    |||||||||||||||| |||| || ||||||||||| ||||||||| |||||||||||||    
T  4583 catacgttagcgcagtagaaagagtggacagacgggcacgggagtacccgtctggacgct 4642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 52538 - 52596
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  52538 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 52596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 43593847 - 43593904
Alignment:
Q  129 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  43593847 gttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 43593904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 35577413 - 35577352
Alignment:
Q  125 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||||||||||| |  |||| ||||||||||||| ||||||||  ||||||||||||||||    
T  35577413 atacgttagcgcaataaaaaatgcggacagacgggcacgggagtgcccgtctggacgctagt 35577352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 51033401 - 51033336
Alignment:
Q  95 ttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacggga 160  Q
    |||||||||||||||||||||||||||  |||| ||||||||| | ||||||   |||||||||||    
T  51033401 ttatataaagaaaaataatcaaatctaaacatatgttagcgcaatagaaaaaaatgacagacggga 51033336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 16612280 - 16612222
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| |||||||||||||| | || ||| |||||| ||||||||||    
T  16612280 cgttagcgcagtagaaagagcggacagacgggtatggaagtgtccgtccggacgctagt 16612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 18811327 - 18811385
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||||||||||| |||| || ||||||||||| |||||| |  ||||||||||||||||    
T  18811327 cgttagcgcagtagaaagagtggacagacgggcacgggaatgcccgtctggacgctagt 18811385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 50377384 - 50377326
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||| |||||| |||| |||||||||||||| ||||||||  ||||||| ||||||||    
T  50377384 cgttaacgcagtagaaagagcggacagacgggcacgggagtgcccgtctgaacgctagt 50377326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 5207 - 5257
Alignment:
Q  134 cgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctag 185  Q
    |||||| ||||||||| |||||||||||| ||||| ||||||||||||||||    
T  5207 cgcagtagaaaaagcgaacagacgggaac-ggagtgtccgtctggacgctag 5257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 33905 - 33866
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctattttt 229  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  33905 ttaataaaggcaatacttgcttttggtgtagccttttttt 33866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 11611 - 11573
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttt 228  Q
    |||||||||||||||| || |||||||||||||||||||    
T  11611 ttaataaaggcaatacttggttttggtgtagcctatttt 11573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 25911 - 25873
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttt 228  Q
    |||||||||||||||| || |||||||||||||||||||    
T  25911 ttaataaaggcaatacttggttttggtgtagcctatttt 25873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 28438 - 28500
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    ||||| |||||||||| ||||||||||| ||||||| | ||||||  | ||||||||||||||    
T  28438 catacattagcgcagtagaaaaagcggatagacgggcatgggagtgcctgtctggacgctagt 28500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 102290 - 102232
Alignment:
Q  128 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 186  Q
    |||| ||||||| |||| |||||||| ||||| ||||||||  ||||||||||||||||    
T  102290 cgttggcgcagtagaaagagcggacaaacgggcacgggagtgcccgtctggacgctagt 102232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 395 - 440
Alignment:
Q  210 ttttggtgtagcctatttttattgcctaaaatatccttgacagttt 255  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||||    
T  395 ttttggtgtagcctatttttacttccttaaatacccttgacagttt 440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 42469 - 42510
Alignment:
Q  124 catacgttagcgcagtggaaaaagcggacagacgggaacggg 165  Q
    |||||||||||||| | ||||||||||||||||||| |||||    
T  42469 catacgttagcgcactagaaaaagcggacagacgggcacggg 42510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 1683 - 1634
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaa 239  Q
    ||||||||||||| |||  ||||||||||||||||||||| || ||||||    
T  1683 ttaataaaggcaaaacacacttttggtgtagcctattttttttacctaaa 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 7194 - 7145
Alignment:
Q  190 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaa 239  Q
    ||||||||||||| |||  ||||||||||||||||||||| || ||||||    
T  7194 ttaataaaggcaaaacacacttttggtgtagcctattttttttacctaaa 7145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University