View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_20 (Length: 387)
Name: NF9853_low_20
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 126 - 371
Target Start/End: Complemental strand, 45060899 - 45060655
Alignment:
| Q |
126 |
atcgtttgaggatctgtgcaggacaatgaaggaggtattgggagacaaagttgaaaaggtagttgtctctgataggattgtggattctccatgctgtttg |
225 |
Q |
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| T |
45060899 |
atcgtttgaggatctgtgcaggacaatgaaggaggtattgg-agacaaagttgaaaaggtagttgtctctgataggattgtggattctccatgctgtttg |
45060801 |
T |
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| Q |
226 |
gtgactggtgaatatggatggagtgcaaacatggaaaggatcatgaaggctcaagcactgagagatagcagcatgagtggttacatgtctagcaagaaga |
325 |
Q |
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| T |
45060800 |
gtgactggtgaatatggatggagtgcaaacatggaaaggatcatgaaggctcaagcactgagagatagcagcatgagtggttacatgtctagcaagaaga |
45060701 |
T |
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| Q |
326 |
caatggagataaaccctgacaatggcattatggaggagctgagaaa |
371 |
Q |
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| T |
45060700 |
caatggagatcaaccctgacaatggcattatggaggagctgagaaa |
45060655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 45061013 - 45060935
Alignment:
| Q |
12 |
tgttggccaactgaaggagtatgatggaaagaaattggtatctgctacaaaggaagggttgaagttggatgaggaaagt |
90 |
Q |
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| T |
45061013 |
tgttggccaactgaaggagtatgatggaaagaaattggtatctgctacaaaggaagggttgaagttggatgaggaaagt |
45060935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 130 - 368
Target Start/End: Original strand, 18621972 - 18622210
Alignment:
| Q |
130 |
tttgaggatctgtgcaggacaatgaaggaggtattgggagacaaagttgaaaaggtagttgtctctgataggattgtggattctccatgctgtttggtga |
229 |
Q |
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| T |
18621972 |
tttgaggatctctgcagggtcatgaaggagatcttgggagataaagtggagaaggtagttgtctctgacaggattgttgattctccatgctgtttggtga |
18622071 |
T |
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| Q |
230 |
ctggtgaatatggatggagtgcaaacatggaaaggatcatgaaggctcaagcactgagagatagcagcatgagtggttacatgtctagcaagaagacaat |
329 |
Q |
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| T |
18622072 |
ccggcgaatacggatggtctgctaacatggagagaatcatgaaggctcaagctctgagggacagcagcatggcaggctacatgtctagtaagaaaactat |
18622171 |
T |
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| Q |
330 |
ggagataaaccctgacaatggcattatggaggagctgag |
368 |
Q |
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| T |
18622172 |
ggaaatcaaccctgataatggcattatggaggaactgag |
18622210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 18621861 - 18621930
Alignment:
| Q |
19 |
caactgaaggagtatgatggaaagaaattggtatctgctacaaaggaagggttgaagttggatgaggaaa |
88 |
Q |
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| T |
18621861 |
caactcaaagagtacgacggaaagaaattggtttcagctacaaaggaaggattgaagctggatgatgaaa |
18621930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 154 - 368
Target Start/End: Complemental strand, 42165284 - 42165070
Alignment:
| Q |
154 |
aaggaggtattgggagacaaagttgaaaaggtagttgtctctgataggattgtggattctccatgctgtttggtgactggtgaatatggatggagtgcaa |
253 |
Q |
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| T |
42165284 |
aaggaagtgttgggcgacaaggttgagaaagtggttgtttctgaccgagttgtggactctccttgctgtctagtgactggtgagtatggttggactgcca |
42165185 |
T |
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| Q |
254 |
acatggaaaggatcatgaaggctcaagcactgagagatagcagcatgagtggttacatgtctagcaagaagacaatggagataaaccctgacaatggcat |
353 |
Q |
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| T |
42165184 |
acatggagaggatcatgaaggcacaggctttgagggatagcagcatggctggttacatgtcaagcaagaagacaatggaaatcaaccctgagaatcccat |
42165085 |
T |
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| Q |
354 |
tatggaggagctgag |
368 |
Q |
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| T |
42165084 |
tatggaggagctgag |
42165070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 154 - 368
Target Start/End: Complemental strand, 42175925 - 42175711
Alignment:
| Q |
154 |
aaggaggtattgggagacaaagttgaaaaggtagttgtctctgataggattgtggattctccatgctgtttggtgactggtgaatatggatggagtgcaa |
253 |
Q |
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| T |
42175925 |
aaggaagtgttgggcgacaaggttgagaaagtggttgtttctgaccgagttgtggactctccttgctgtctagtgactggtgagtatggttggactgcca |
42175826 |
T |
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| Q |
254 |
acatggaaaggatcatgaaggctcaagcactgagagatagcagcatgagtggttacatgtctagcaagaagacaatggagataaaccctgacaatggcat |
353 |
Q |
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||||||| |||||||||||||| || || |||| |||||||||||| |||||||||||| ||||||||||||||||| || |||||||| ||| ||| |
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| T |
42175825 |
acatggagaggatcatgaaggcacaggctttgagggatagcagcatggctggttacatgtcaagcaagaagacaatggaaatcaaccctgagaatcccat |
42175726 |
T |
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| Q |
354 |
tatggaggagctgag |
368 |
Q |
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||||||||||||||| |
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| T |
42175725 |
tatggaggagctgag |
42175711 |
T |
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