View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_23 (Length: 357)
Name: NF9853_low_23
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_23 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 31407138 - 31406793
Alignment:
| Q |
18 |
agattaaactgcaattagtcattgttggagcaggtttcatctatttgcttataattattcgttcttctttttcttccataactaccatagcagaaaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || ||||||| || | || || | |||||||| |
|
|
| T |
31407138 |
agattaaactgcaattagtcattgttggagcaggtttcagctattctcttattattatacgttcttcgttatcttccacaaattccgtaccggaaaatga |
31407039 |
T |
|
| Q |
118 |
gtatattggacttcaa------ggtgaaaattcagtagtcattgaaatggattcactactaaggtccaataatgatatttattctggaatgatgcaacaa |
211 |
Q |
| |
|
|||| ||||| || | ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31407038 |
gtattttggagttggactccgcggtgaaaattcagtagttattgaaatggattcactactaaggcccagtaatgatatttattctggaatgatgcaacaa |
31406939 |
T |
|
| Q |
212 |
cttacgacttgtataaatgcacttcaacaggatagtttgaatatcattgacaggctaatggaggaatacaatcaaggtaagtgtgattttgaaatggatg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31406938 |
cttacgacttgtataaatgcacttcaacaggatagtttgaatatcattgacaggctaatggaggaatacaatcaaggtaagtgtgattttgaaatggata |
31406839 |
T |
|
| Q |
312 |
ctctgccgtcagaaaagctacataatcttcatgaaattgtgaagtt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31406838 |
ctctgccgtcagaaaagctacataatcttcatgaaattgtgaagtt |
31406793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 31279201 - 31279135
Alignment:
| Q |
18 |
agattaaactgcaattagtcattgttggagcaggtttcatctatttgcttataattattcgttcttc |
84 |
Q |
| |
|
||||||||||| |||| ||||| ||||||| ||||||| ||| |||||||| ||| |||||||||| |
|
|
| T |
31279201 |
agattaaactgttattattcattcttggagctggtttcagctacttgcttattattcttcgttcttc |
31279135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 31505612 - 31505547
Alignment:
| Q |
18 |
agattaaactgcaattagtcattgttggagcaggtttcatctatttgcttataattattcgttctt |
83 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||| ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
31505612 |
agattaaattgcagttattcattgttggagctggtttcagttattcccttattattattcgttctt |
31505547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University