View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_24 (Length: 344)
Name: NF9853_low_24
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 32662208 - 32662026
Alignment:
| Q |
1 |
tcgccttcacaaattcaaacctctatgcttttcaacaaccacaccttcaccttcttctcgaaaactcatcctttactctaaacccggttgctgtttatgc |
100 |
Q |
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| T |
32662208 |
tcgccttcacaaattcaaacctctatgcttttcaacaaccacaacttcaccttcttctcgaaaactcatcctttactctaaacccggttgctgtttatgc |
32662109 |
T |
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| Q |
101 |
gatggtctcaaagagaagcttcaagatgcattctcgctttctggtccacattcccttaacgacgttgatttacaggtatcatc |
183 |
Q |
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| T |
32662108 |
gatggtctcaaagagaagcttcaagatgcattctcgctttctggtccacattcccttaacgacgttgatttacaggtatcatc |
32662026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 32661956 - 32661873
Alignment:
| Q |
251 |
atcagataagagatataacgagcaatccagaatgggaaaaagcttatcaatatgagatacctgtgttagctaaagttctctctg |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32661956 |
atcagataagagatataacgagcaatccagaatgggaaaaagcttatcaatatgagatacctgtgttagctaaagttctctctg |
32661873 |
T |
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