View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_26 (Length: 339)
Name: NF9853_low_26
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 1241274 - 1241573
Alignment:
| Q |
1 |
tgattttgttgttattattattattgtgagttttaggaaataaaactagtgattgagaagagacatagaaaaggcaggaacaccttgctttgtcttgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1241274 |
tgattttgttgttattattattattgtgagttttaggaaataaaactagtgattgagaagagacatagaaaaggtaggaacaccttgctttgtcttgtga |
1241373 |
T |
|
| Q |
101 |
gagttcacttttcagctgtattgttcagcttgaagttaagaataaagggaacatgagatcattgttggtgatatggtatggacatataaaggttcatgtt |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1241374 |
gagttcacttttaagctgtattgttcagcttgaagttaagaataaagggaacatgagatcattgttggtga-----tatggacatataaaggttcatgtt |
1241468 |
T |
|
| Q |
201 |
gtctatttcatttgcatgtcactattgaaatagatagtcaagatgagttat-tttttagtgaattgcactttgctgctttaaattttctaaacaataatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1241469 |
gtctatttcatttgcatgtcactattgaaatagatagtcaagatgagttatatttttagtgaattgcactttgctgctttaaattttctaaacaataatg |
1241568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University