View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_27 (Length: 333)
Name: NF9853_low_27
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 327758 - 328062
Alignment:
| Q |
11 |
tggacatcaaatctcattgtttcccctcaaacaaatctctttaggttttaggcgcgaatatggaaagaccagtgcaatttgtaagtgatgttaatgacaa |
110 |
Q |
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| T |
327758 |
tggacattaaatctcattgtttcccttcaaacaaatctctttaggttttaggcgcgaatatggaaagaccagtgcaatttgtaagtgatgttaatgacaa |
327857 |
T |
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| Q |
111 |
aaaggacttttggaagttggttgtcaaagtcaaagacaaatggacagctgtgaaagcttggaaggagcacctagagatggtcatagttgatgctcaggta |
210 |
Q |
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| T |
327858 |
aaaggacttttggaagttggttgtcaaagtcaaagacaaatggacagttgtgaaagctgggaaggagcacctagagatggtcatagttgatgctcaggta |
327957 |
T |
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| Q |
211 |
atatagatcttacaaatttataagacttttattattatagcttattcaataactgttttattgttgtccttcatagggaaatgatattcaagtcattgtc |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327958 |
atacagatcttacaaatttataagacttttattattatagcttattcaataactgttttattgttgtccttcatagggaaatgatattcaagtcattgtc |
328057 |
T |
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| Q |
311 |
ccaac |
315 |
Q |
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||||| |
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| T |
328058 |
ccaac |
328062 |
T |
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