View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_29 (Length: 329)
Name: NF9853_low_29
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 31406860 - 31406545
Alignment:
| Q |
1 |
aagtgtgatgttgaaatggatgcgctgccagcaggaaaggtacataatcttcatgaaagtgtgaagttgatgctatgtgctgggtatgagaaagagtgct |
100 |
Q |
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| T |
31406860 |
aagtgtgattttgaaatggatactctgccgtcagaaaagctacataatcttcatgaaattgtgaagttgatgctatgtgctgggtatgagaaagagtgct |
31406761 |
T |
|
| Q |
101 |
ctgctgtgtacattagttggcggaaggtactcttgcagaagggtctactaaataaaatatttgtgttgccagaggcaaagatcaacaccgagcgtgaaag |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31406760 |
ctgctgtgtacatcagttggcggaaggtactcttgcagaagggtctactaaataaaatatttgtgttgccggaggcaaagatcaacaccgagcgtgaaag |
31406661 |
T |
|
| Q |
201 |
agagcgatacttagataccatgtttcaaagatggattactgcttctgacatagctacgacggttttgtttccaattgaacaaaaattctgcgatcttgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31406660 |
agagcgatacttagataccatgtttcaaagatggatgactgcttctgacatagctacgacggttttgtttccaattgaacaaaaattctgcgatcttgtc |
31406561 |
T |
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| Q |
301 |
ttctcagggttctcct |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
31406560 |
ttctcagggttctcct |
31406545 |
T |
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