View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9853_low_3 (Length: 699)

Name: NF9853_low_3
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9853_low_3
NF9853_low_3
[»] chr3 (13 HSPs)
chr3 (19-371)||(41530488-41530840)
chr3 (491-697)||(41530960-41531166)
chr3 (15-59)||(4533383-4533427)
chr3 (20-64)||(39674095-39674139)
chr3 (19-58)||(24645660-24645699)
chr3 (19-58)||(27391364-27391403)
chr3 (19-66)||(29359664-29359711)
chr3 (15-64)||(39579810-39579859)
chr3 (15-64)||(53330804-53330853)
chr3 (15-64)||(53334488-53334537)
chr3 (15-64)||(53338165-53338214)
chr3 (15-64)||(53363143-53363192)
chr3 (19-51)||(30551680-30551712)
[»] chr5 (3 HSPs)
chr5 (583-679)||(15626123-15626219)
chr5 (20-64)||(6665629-6665673)
chr5 (15-59)||(32658828-32658872)
[»] chr1 (3 HSPs)
chr1 (592-676)||(816572-816656)
chr1 (270-371)||(817375-817476)
chr1 (19-64)||(29096174-29096219)
[»] chr4 (1 HSPs)
chr4 (15-59)||(32760430-32760474)
[»] chr7 (8 HSPs)
chr7 (19-64)||(22205417-22205462)
chr7 (19-64)||(22229277-22229322)
chr7 (15-64)||(37245387-37245436)
chr7 (15-59)||(45280679-45280723)
chr7 (19-64)||(19928367-19928412)
chr7 (19-64)||(25443526-25443571)
chr7 (20-64)||(30947463-30947507)
chr7 (20-64)||(40820018-40820062)
[»] chr2 (4 HSPs)
chr2 (19-64)||(27709950-27709995)
chr2 (19-64)||(14314509-14314554)
chr2 (19-56)||(14811190-14811227)
chr2 (15-60)||(29080865-29080910)
[»] scaffold0017 (1 HSPs)
scaffold0017 (15-64)||(38172-38221)
[»] chr8 (5 HSPs)
chr8 (19-64)||(10786884-10786929)
chr8 (19-64)||(20289277-20289322)
chr8 (19-64)||(21075907-21075952)
chr8 (19-64)||(29054469-29054514)
chr8 (27-64)||(44718759-44718796)
[»] chr6 (1 HSPs)
chr6 (19-64)||(8861957-8862002)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 41530488 - 41530840
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggcagcatacaatactctacttatactagtactatatagtaagcccataagtacatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41530488 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggcagaatacaatactctacttatactagtactatatagtaagcccataagtacatt 41530587  T
Q  119 aaatgcacactgaatagaataaaataatcacatttaattcgtgtatttccagcacaaagagattggggaatattatgcatcaaaattagaaaagtcataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41530588 aaatgcacactgaatagaataaaataatcacatttaattcgtgtatttccagcacaaagagactggggaatattatgcatcaaaattagaaaagtcataa 41530687  T
Q  219 gtcatatatacaaacccattgttccagaggtagcctagagtctttcacagtaatacttgttttccaatctcttagcttggaacctgtgtgtcgttcccat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41530688 gtcatatatacaaacccattgttccagaggtagcctagagtctttcacagtaatacttgttttccaatctcttagcttggaacctgtgtgtcgttcccat 41530787  T
Q  319 tcactaagcgcttgcttttctgtcccacaaaaaccacacttgcacacaactct 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41530788 tcactaagcgcttgcttttctgtcccacaaaaaccacacttgcacacaactct 41530840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 491 - 697
Target Start/End: Original strand, 41530960 - 41531166
Alignment:
Q  491 cggtacattcaaaatcagcattaatcaatttgaaacatgacaatgcaggttaaatgataagctgtgatgggacnnnnnnnnttatgtccaagaattttga 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |||||||||||||||||||    
T  41530960 cggtacattcaaaatcagcattaatcaatttgaaacatgacaatgcaggttaaatgataagctgtgataggacaaaaaaaattatgtccaagaattttga 41531059  T
Q  591 tggagtttgtgcttacaagtgtaggcttggaaaatatatgccttccacaccattgcagagaacattgaccttatttgaaagcactaactgctcacaggtt 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  41531060 tggagtttgtgcttacaagtgtaggcttggaaaatatatgccttccacaccattgcagagaacattgaccttatttgaaagcactaactgctcactgttt 41531159  T
Q  691 ctgctcg 697  Q
    |||||||    
T  41531160 ctgctcg 41531166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 4533427 - 4533383
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatc 59  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  4533427 atcagatacgtgtcggatacgatacttcaccattttcgaagtatc 4533383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 39674139 - 39674095
Alignment:
Q  20 atacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||    
T  39674139 atacgtgtcggatacgatacttcaccatttttgaagtatcggggc 39674095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 24645660 - 24645699
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtat 58  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  24645660 gatacgtgtcgaacacgattcttcaccatttttggagtat 24645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 27391364 - 27391403
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtat 58  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  27391364 gatacgtgtcagacacgattcttcaccatttttggagtat 27391403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 29359711 - 29359664
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggcag 66  Q
    ||||||||| ||||||||||||||  ||||||||||||||| ||||||    
T  29359711 gatacgtgttggacacgattcttcgtcatttttgaagtatcggggcag 29359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 39579859 - 39579810
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||||||| || ||||| |||||||||||||| |||||| ||||    
T  39579859 atcagatacgtgtcagatacgatacttcaccatttttggagtatcggggc 39579810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53330804 - 53330853
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||| ||||||| ||||| |||||||||||||| |||||| ||||    
T  53330804 atcagatacatgtcggatacgatacttcaccatttttggagtatcggggc 53330853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53334488 - 53334537
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||| ||||||| ||||| |||||||||||||| |||||| ||||    
T  53334488 atcagatacatgtcggatacgatacttcaccatttttggagtatcggggc 53334537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53338165 - 53338214
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||| ||||||| ||||| |||||||||||||| |||||| ||||    
T  53338165 atcagatacatgtcggatacgatacttcaccatttttggagtatcggggc 53338214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53363143 - 53363192
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||| ||||||| ||||| |||||||||||||| |||||| ||||    
T  53363143 atcagatacatgtcggatacgatacttcaccatttttggagtatcggggc 53363192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 30551712 - 30551680
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccattttt 51  Q
    |||||||||| ||||||||||||||||||||||    
T  30551712 gatacgtgtcagacacgattcttcaccattttt 30551680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 583 - 679
Target Start/End: Complemental strand, 15626219 - 15626123
Alignment:
Q  583 aattttgatggagtttgtgcttacaagtgtaggcttggaaaatatatgccttccacaccattgcagagaacattgaccttatttgaaagcactaact 679  Q
    ||||||||  |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||| |||||||    
T  15626219 aattttgaatgagtttatgcttacaagtgaaggcttggaaaatatatgccttccacactattgcagagaacagtgaccttctttggaagtactaact 15626123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 6665673 - 6665629
Alignment:
Q  20 atacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||||||||||| |||||||||||| | |||||| ||||    
T  6665673 atacgtgtcggacacgatccttcaccattttcggagtatcggggc 6665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 32658872 - 32658828
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatc 59  Q
    |||||||| ||||||||||||||||||||  ||||||| ||||||    
T  32658872 atcagatatgtgtcggacacgattcttcattatttttggagtatc 32658828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 816656 - 816572
Alignment:
Q  592 ggagtttgtgcttacaagtgtaggcttggaaaatatatgccttccacaccattgcagagaacattgaccttatttgaaagcacta 676  Q
    ||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  816656 ggagtttatgcttacaagtgaagacatggaaaatatatgccttccacaccattgcagagaacagtgaccttctttggaagcacta 816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 817476 - 817375
Alignment:
Q  270 aatacttgttttccaatctcttagcttggaacctgtgtgtcgttcccattcactaagcgcttgcttttctgtcccacaaaaaccacacttgcacacaact 369  Q
    ||||||||||||||| | ||| |  |||||||||||||| ||||||||||||||||| || || ||||| |||||||||||| |||||||||||| ||||    
T  817476 aatacttgttttccagtttctaaatttggaacctgtgtggcgttcccattcactaagtgcctgtttttcagtcccacaaaaatcacacttgcacataact 817377  T
Q  370 ct 371  Q
    ||    
T  817376 ct 817375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 29096219 - 29096174
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||  |||||||||||||| ||||||||||||||| ||||    
T  29096219 gatacgtgttagacacgattcttcatcatttttgaagtatcggggc 29096174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 32760474 - 32760430
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatc 59  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  32760474 atcagatacgtgttggacacgattcttcaccatttttgaagtatc 32760430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 22205417 - 22205462
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||    
T  22205417 gatacgtatcggacacgattcttcaccatttttggagtatcggggc 22205462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 22229322 - 22229277
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||    
T  22229322 gatacgtatcggacacgattcttcaccatttttggagtatcggggc 22229277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 37245387 - 37245436
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  37245387 atcagatacgtgtcggatacgatacttcaccatttttggagtatcggggc 37245436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 45280723 - 45280679
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatc 59  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||    
T  45280723 atcagatacatgtcggacaggattcatcaccatttttgaagtatc 45280679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 19928367 - 19928412
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  19928367 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 19928412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 25443571 - 25443526
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||  |||||||||||    
T  25443571 gatacgtgtcggatacgatacttcaccattttttgagtatcagggc 25443526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 30947507 - 30947463
Alignment:
Q  20 atacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||||| ||||| |||||||||||||| |||||| ||||    
T  30947507 atacgtgtcggatacgatacttcaccatttttgtagtatcggggc 30947463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 40820018 - 40820062
Alignment:
Q  20 atacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||||| ||||| |||||||||||||| |||||| ||||    
T  40820018 atacgtgtcggatacgatacttcaccatttttggagtatcggggc 40820062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 27709950 - 27709995
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  27709950 gatacgtgtcagacacgattcttcaccatttttggagtatcggggc 27709995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 14314509 - 14314554
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  14314509 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 14314554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 14811227 - 14811190
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagt 56  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  14811227 gatacgtgtcggatacgatacttcaccatttttgaagt 14811190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 29080910 - 29080865
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatca 60  Q
    |||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  29080910 atcagatatgtgtcagacacgattcttcactatttttgtagtatca 29080865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 38172 - 38221
Alignment:
Q  15 atcagatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||||||| ||||| ||||| |||||||| |||||| ||||    
T  38172 atcagatacgtgtcggatacgatacttcatcatttttggagtatcggggc 38221  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10786884 - 10786929
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  10786884 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 10786929  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 20289322 - 20289277
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  20289322 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 20289277  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 21075952 - 21075907
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  21075952 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 21075907  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 29054514 - 29054469
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  29054514 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 29054469  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 44718759 - 44718796
Alignment:
Q  27 tcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  44718759 tcggacacgattcttcatcatttttggagtatcagggc 44718796  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8862002 - 8861957
Alignment:
Q  19 gatacgtgtcggacacgattcttcaccatttttgaagtatcagggc 64  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  8862002 gatacgtgtcggatacgatacttcaccatttttggagtatcggggc 8861957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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