View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_37 (Length: 296)
Name: NF9853_low_37
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 31152602 - 31152489
Alignment:
| Q |
9 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152602 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
31152503 |
T |
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| Q |
109 |
tattttgtatctct |
122 |
Q |
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|||||||||||||| |
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| T |
31152502 |
tattttgtatctct |
31152489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 31171164 - 31171051
Alignment:
| Q |
9 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31171164 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
31171065 |
T |
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| Q |
109 |
tattttgtatctct |
122 |
Q |
| |
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|||| ||||||||| |
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| T |
31171064 |
tattctgtatctct |
31171051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 31152420 - 31152314
Alignment:
| Q |
190 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152420 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
31152321 |
T |
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| Q |
290 |
cgttttc |
296 |
Q |
| |
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| ||||| |
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| T |
31152320 |
cattttc |
31152314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 31170699 - 31170593
Alignment:
| Q |
190 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31170699 |
attgtcaaaaccactcgcaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
31170600 |
T |
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| Q |
290 |
cgttttc |
296 |
Q |
| |
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||||||| |
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| T |
31170599 |
cgttttc |
31170593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 31170981 - 31170875
Alignment:
| Q |
190 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31170981 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
31170882 |
T |
|
| Q |
290 |
cgttttc |
296 |
Q |
| |
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| ||||| |
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|
| T |
31170881 |
cattttc |
31170875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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