View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9853_low_38 (Length: 295)

Name: NF9853_low_38
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9853_low_38
NF9853_low_38
[»] scaffold1052 (3 HSPs)
scaffold1052 (124-250)||(771-897)
scaffold1052 (55-125)||(668-738)
scaffold1052 (248-284)||(962-998)
[»] chr2 (4 HSPs)
chr2 (123-250)||(6182526-6182653)
chr2 (66-125)||(6182438-6182497)
chr2 (248-284)||(6182718-6182754)
chr2 (19-59)||(6182381-6182421)
[»] chr1 (3 HSPs)
chr1 (123-250)||(5101261-5101386)
chr1 (55-125)||(5101163-5101232)
chr1 (248-284)||(5101451-5101487)
[»] chr3 (4 HSPs)
chr3 (123-250)||(32356299-32356427)
chr3 (66-116)||(32356211-32356261)
chr3 (19-59)||(32356154-32356194)
chr3 (248-284)||(32356492-32356528)
[»] scaffold0268 (2 HSPs)
scaffold0268 (123-177)||(20592-20646)
scaffold0268 (19-68)||(20460-20509)
[»] chr7 (1 HSPs)
chr7 (19-68)||(10200413-10200462)


Alignment Details
Target: scaffold1052 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 771 - 897
Alignment:
Q  124 aaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctgg 223  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  771 aaataggacacacaaattcattgttgttgttgttagaggtaaagtggaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatgg 870  T
Q  224 attcgaaacagcgttgtacccatgtcc 250  Q
    |||||||||||||||||||||||||||    
T  871 attcgaaacagcgttgtacccatgtcc 897  T

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Target: scaffold1052; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 668 - 738
Alignment:
Q  55 attaatggatatacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 125  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  668 attaatggatatacgtctttcattgagttttgtaaaacttgagatttaattaattcaatttggactttcaa 738  T

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Target: scaffold1052; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 962 - 998
Alignment:
Q  248 tcctcgtcactccagtgttccgtttgcttctcttcat 284  Q
    |||||||||||||||||||||||||||||||||||||    
T  962 tcctcgtcactccagtgttccgtttgcttctcttcat 998  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 6182526 - 6182653
Alignment:
Q  123 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctg 222  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  6182526 caaataggacacacaaattcattgttgttgttgttgaaggtagagtgaaaaaggaatatgtgttttaaaacttgtttttttggtttgatgttggaatatg 6182625  T
Q  223 gattcgaaacagcgttgtacccatgtcc 250  Q
    ||||||||||||||||||||||||||||    
T  6182626 gattcgaaacagcgttgtacccatgtcc 6182653  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 6182438 - 6182497
Alignment:
Q  66 tacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 125  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6182438 tacgtctgtcattgagttttgtaaaacttgagttttaattaattcaatttgaactttcaa 6182497  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 6182718 - 6182754
Alignment:
Q  248 tcctcgtcactccagtgttccgtttgcttctcttcat 284  Q
    |||||||||||||||||||||||||||||||||||||    
T  6182718 tcctcgtcactccagtgttccgtttgcttctcttcat 6182754  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 6182381 - 6182421
Alignment:
Q  19 cctttgtcatctcaatcaaattaaattatagaaattattaa 59  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  6182381 cctttgttatctcaatcaaattaaattatagaaatcattaa 6182421  T

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Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 5101261 - 5101386
Alignment:
Q  123 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttggctttttggtttgatgttggaatctg 222  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  5101261 caaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaaggaat--gtgttttaaaacttgtttttttggtttgatgttggaatctg 5101358  T
Q  223 gattcgaaacagcgttgtacccatgtcc 250  Q
    |||||| |||||| ||||||||||||||    
T  5101359 gattcggaacagcattgtacccatgtcc 5101386  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 5101163 - 5101232
Alignment:
Q  55 attaatggatatacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttgggctttcaa 125  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5101163 attaatggatatacgtcg-tcattgagttttgtaaaacttgagttttaattaattcaatttggactttcaa 5101232  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 5101451 - 5101487
Alignment:
Q  248 tcctcgtcactccagtgttccgtttgcttctcttcat 284  Q
    |||||||||||||||||||||||||||||||||||||    
T  5101451 tcctcgtcactccagtgttccgtttgcttctcttcat 5101487  T

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Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 32356299 - 32356427
Alignment:
Q  123 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaaggaatatgtgttttaaaacttg-gctttttggtttgatgttggaatct 221  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||||   ||||| ||||||| |||||||||    
T  32356299 caaataggacacacaaattcattgttgttgttgttgaaggtagagtgaaaaaggaatatgtgttttaaaacttgtttttttttgtttgattttggaatct 32356398  T
Q  222 ggattcgaaacagcgttgtacccatgtcc 250  Q
    |||||||||||||||||||||||||||||    
T  32356399 ggattcgaaacagcgttgtacccatgtcc 32356427  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 32356211 - 32356261
Alignment:
Q  66 tacgtctctcattgagttttgtaaaacttgagttttaattaattcaatttg 116  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  32356211 tacgtctgtcattgagttttgtaaaacttaagttttaattaattcaatttg 32356261  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 32356154 - 32356194
Alignment:
Q  19 cctttgtcatctcaatcaaattaaattatagaaattattaa 59  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  32356154 cctttgttatctcaatcaaattaaattatagaaatcattaa 32356194  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 32356492 - 32356528
Alignment:
Q  248 tcctcgtcactccagtgttccgtttgcttctcttcat 284  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32356492 tcctcgtcactccagtgttctgtttgcttctcttcat 32356528  T

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Target: scaffold0268 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 20592 - 20646
Alignment:
Q  123 caaataggacacacaaattcattgttgttgttgttgtgggtaaagtggaaaagga 177  Q
    |||||||||||||||| | |||||||||||||||||   ||||| ||||||||||    
T  20592 caaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaagga 20646  T

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Target: scaffold0268; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 20460 - 20509
Alignment:
Q  19 cctttgtcatctcaatcaaattaaattatagaaattattaatggatatac 68  Q
    ||||||| ||||||| ||||||  ||||||||||| ||||||||||||||    
T  20460 cctttgttatctcaaacaaattggattatagaaatcattaatggatatac 20509  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 10200462 - 10200413
Alignment:
Q  19 cctttgtcatctcaatcaaattaaattatagaaattattaatggatatac 68  Q
    ||||||| ||||||| ||||||  ||||||||||| ||||||||||||||    
T  10200462 cctttgttatctcaaacaaattggattatagaaatcattaatggatatac 10200413  T

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