View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_40 (Length: 293)
Name: NF9853_low_40
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 27057967 - 27057702
Alignment:
| Q |
18 |
atttttccatagtattttatcactgatttgtgttatatgaatgcttggggtggtagatttacactgttcttgtaagtagggcggccacggagatattttc |
117 |
Q |
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| T |
27057967 |
atttttccatagtattttatcactgatttgtgttatatgaatgcttggggtggtagatttacactgttcttgtaagtagggcggccacagagacatttgc |
27057868 |
T |
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| Q |
118 |
tcataattgggtggagtgcatttgcgaacaagaaaaagctaatggctcttttccaagaccagttgggtatctccctcgcccttataaggttggctctctt |
217 |
Q |
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| T |
27057867 |
tcataattgggtggagtgcatttgcgaacaaaaaaaagctaatggctcttttccaagaccagttgggtatctccctcgcccttataaggttggctctctt |
27057768 |
T |
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| Q |
218 |
gtgtgaagttatttatttctcaaagcaattttattaacatcgagtctgttataattgtggcctttg |
283 |
Q |
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| T |
27057767 |
gtgtgaagttatttatttctcaaagcaattttattaacatcgagtctgttataattgtggcttttg |
27057702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 39833504 - 39833772
Alignment:
| Q |
18 |
atttttccatagtattttatcactgatttgtgttatatgaatgcttggggtgg---tagatttacactgttcttgtaagtagggcggccacggagatatt |
114 |
Q |
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| T |
39833504 |
attttgccatagtattttatcactgatctgttttatatgaatgcttggagggggtttagatttaccctgttcttgtaagcagggaagccacagagacatt |
39833603 |
T |
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| Q |
115 |
ttctcataattgggtggagtgcatttgcgaacaagaaaaagctaatggctcttttccaagaccagttgggtatctccctcgcccttataaggttggctct |
214 |
Q |
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| T |
39833604 |
tgctcataattgggtggagtgcatttgcgaacaataaaaagctaatggctcttttccaagaccagttgggtatctccctcgcccttataaggttagctct |
39833703 |
T |
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| Q |
215 |
cttgtgtgaagttatttatttctcaaagcaattttattaacatcgagtctgttataattgtggcctttg |
283 |
Q |
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| T |
39833704 |
cttatctgcagttattaaattctcaaagcaattttattaacatcgaggctgttataattgtggcttttg |
39833772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 160 - 273
Target Start/End: Original strand, 45354043 - 45354156
Alignment:
| Q |
160 |
tggctcttttccaagaccagttgggtatctccctcgcccttataaggttggctctcttgtgtgaagttatttatttctcaaagcaattttattaacatcg |
259 |
Q |
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| T |
45354043 |
tggctcttttccaagaccatttgggcatctccctctcccttataaggttagctcttttatatgcagttatttatttctcaaagaaaatttattgagatca |
45354142 |
T |
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| Q |
260 |
agtctgttataatt |
273 |
Q |
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| T |
45354143 |
agtctgttataatt |
45354156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 24730289 - 24730335
Alignment:
| Q |
107 |
gagatattttctcataattgggtggagtgcatttgcgaacaagaaaa |
153 |
Q |
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| T |
24730289 |
gagacatttgctcataactgggtggagtgcatttgcgaacaagaaaa |
24730335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 9240493 - 9240542
Alignment:
| Q |
224 |
agttatttatttctcaaagcaattttattaacatcgagtctgttataatt |
273 |
Q |
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| T |
9240493 |
agttatttatttctcaaagaaaatttattgagattgagtctgttataatt |
9240542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 11492659 - 11492603
Alignment:
| Q |
101 |
gccacggagatattttctcataattgggtggagtgcatttgcgaacaagaaaaagct |
157 |
Q |
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| T |
11492659 |
gccacagagacatttgctcataactgggtggagtgcattttcaaacaagaaaaagct |
11492603 |
T |
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