View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_41 (Length: 285)
Name: NF9853_low_41
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 1044731 - 1044466
Alignment:
| Q |
1 |
atgagaagaatgaataaaaaatataactatgtctataattaacaaaattcttaattaagtgaccaaattcactgcaaaaccaatgtataagaagaaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044731 |
atgagaagaatgaataaaaaatataactatgtctataattaacaaaattcttaattaagtgaccaaattcactgcaaaaccaatgtataagaagaaaaac |
1044632 |
T |
|
| Q |
101 |
aacttattaatatggaggtccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044631 |
aacttattaatatggaggtccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaa |
1044532 |
T |
|
| Q |
201 |
atgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044531 |
atgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatct |
1044466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 1034226 - 1034079
Alignment:
| Q |
119 |
tccacccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctcccta |
218 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
1034226 |
tccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctg |
1034127 |
T |
|
| Q |
219 |
ttatacttgttgagaggagcattaagtgcaaatctctttggcaaatct |
266 |
Q |
| |
|
||||| || ||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
1034126 |
ttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatct |
1034079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 1066197 - 1066081
Alignment:
| Q |
150 |
tttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaa |
249 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| | ||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||| |||||||| |
|
|
| T |
1066197 |
tttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaa |
1066098 |
T |
|
| Q |
250 |
atctctttggcaaatct |
266 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
1066097 |
atctctttggtaaatct |
1066081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 1059116 - 1058989
Alignment:
| Q |
139 |
tacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagc |
238 |
Q |
| |
|
||||||| || ||||||||||||||||| || |||||||| ||||| | ||| ||||| ||| ||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
1059116 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagc |
1059017 |
T |
|
| Q |
239 |
attaagtgcaaatctctttggcaaatct |
266 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
1059016 |
attaagtgcaaatctcttcggcaaatct |
1058989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 1053833 - 1053724
Alignment:
| Q |
157 |
attcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctt |
256 |
Q |
| |
|
|||||||| | || |||||||| ||||| | ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1053833 |
attcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctt |
1053734 |
T |
|
| Q |
257 |
tggcaaatct |
266 |
Q |
| |
|
||| |||||| |
|
|
| T |
1053733 |
tggtaaatct |
1053724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 1071921 - 1071808
Alignment:
| Q |
153 |
cttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatc |
252 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| | ||| |||||||||| ||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1071921 |
cttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatc |
1071822 |
T |
|
| Q |
253 |
tctttggcaaatct |
266 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1071821 |
tctttggcaaatct |
1071808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 1047164 - 1047052
Alignment:
| Q |
154 |
ttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatct |
253 |
Q |
| |
|
||||||||||||| || ||||| || ||||||| ||| ||||||||| || ||||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
1047164 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaatct |
1047065 |
T |
|
| Q |
254 |
ctttggcaaatct |
266 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1047064 |
ctttggcaaatct |
1047052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 1640371 - 1640477
Alignment:
| Q |
160 |
caagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttgg |
259 |
Q |
| |
|
||||||| || ||||| || ||||| | |||||||||||| |||||||||| |||| |||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
1640371 |
caagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg |
1640470 |
T |
|
| Q |
260 |
caaatct |
266 |
Q |
| |
|
|||||| |
|
|
| T |
1640471 |
taaatct |
1640477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University