View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9853_low_43 (Length: 282)

Name: NF9853_low_43
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9853_low_43
NF9853_low_43
[»] chr5 (3 HSPs)
chr5 (39-211)||(11336209-11336381)
chr5 (106-211)||(43379448-43379553)
chr5 (106-211)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (172-211)||(13208225-13208264)
chr6 (151-209)||(3163534-3163592)
chr6 (52-94)||(10740746-10740788)
chr6 (106-211)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (158-205)||(3466658-3466705)
chr2 (39-104)||(8985740-8985805)
chr2 (158-211)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (120-186)||(3582072-3582138)
[»] chr7 (3 HSPs)
chr7 (158-211)||(35752377-35752430)
chr7 (39-104)||(46964298-46964363)
chr7 (158-206)||(46294693-46294741)
[»] chr4 (1 HSPs)
chr4 (39-104)||(16869676-16869741)
[»] chr3 (1 HSPs)
chr3 (106-174)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
Q  39 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca 138  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11336209 gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca 11336308  T
Q  139 tttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 211  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11336309 ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 11336381  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  106 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 205  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  206 ggtttg 211  Q
    ||||||    
T  43379453 ggtttg 43379448  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  106 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 205  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  206 ggtttg 211  Q
    ||||||    
T  43378672 ggtttg 43378677  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  172 gtgacaaacataaaagcaagggttaggattaaaaggtttg 211  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  151 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 209  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
Q  52 attcaagaagaatcaaaccatgctcttgataccatgtaaacaa 94  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  10740788 attcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  106 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 205  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  206 ggtttg 211  Q
    | ||||    
T  13207446 gatttg 13207451  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  158 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 205  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
Q  39 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 104  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985805 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  158 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 211  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  120 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 186  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  158 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 211  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
Q  39 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 104  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964298 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 46294693 - 46294741
Alignment:
Q  158 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaag 206  Q
    ||||||| |||||| ||||||  |||||| |||||||||||||||||||    
T  46294693 tagatgtgtgacatatgacaataataaaatcaagggttaggattaaaag 46294741  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
Q  39 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 104  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  16869741 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 16869676  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 40613868 - 40613800
Alignment:
Q  106 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtg 174  Q
    ||||||||||||  |||||| || |||||||||||| |||| || || ||| ||||||| |||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtg 40613800  T

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