View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_46 (Length: 269)
Name: NF9853_low_46
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 35228446 - 35228196
Alignment:
| Q |
1 |
caaattacccttatacaagagttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaaattaagggatatgagcatgttcccgccaataa |
100 |
Q |
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| T |
35228446 |
caaattacccttatacaagggttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaaattaagggatatgagcatgttcccgccaataa |
35228347 |
T |
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| Q |
101 |
tgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatattgccgcgacaaaacgcgcttttcaattttactcaagtggaattttgaaa |
200 |
Q |
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| T |
35228346 |
tgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatatcgccgcgacaaaacgcgcttttcaattttactcaagtggaattttgaaa |
35228247 |
T |
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| Q |
201 |
ggaaaatgtggaatttatttagatcatacagtgactatagttggttatggt |
251 |
Q |
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| T |
35228246 |
ggaaaatgtggaattgatttagatcatacagttactatagttggttatggt |
35228196 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 31176615 - 31176534
Alignment:
| Q |
171 |
tttcaattttactcaagtggaattttgaaaggaaaatgtggaatttatttagatcatacagtgactatagttggttatggtg |
252 |
Q |
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| T |
31176615 |
tttcagttttactcaggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggtg |
31176534 |
T |
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