View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_49 (Length: 256)
Name: NF9853_low_49
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1241271 - 1241031
Alignment:
| Q |
1 |
ccaaaaaactatttgccatcttacttctatagcatctcaaaacatcccataattaatgtctcataaaaattaaccaattttagtctcaagaattgaacat |
100 |
Q |
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|||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1241271 |
ccaaaaaactattttccttcttacttctatagcctctcaaaacatcccataat----gtctcataaaaattaacctattttagtctcaagaattgaacat |
1241176 |
T |
|
| Q |
101 |
cttctacaannnnnnnnnnnaaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacagccattgacattgataattcatcttccaaaagagt |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1241175 |
cttctacaattttttttta-aaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacaaccattgacattgataattcatcttccaaaagagt |
1241077 |
T |
|
| Q |
201 |
atctttctctgaccaacagcaacagcaccaacacaatgttcctttg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241076 |
atctttctctgaccaacagcaacagcaccaacacaatgttcctttg |
1241031 |
T |
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