View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_5 (Length: 554)
Name: NF9853_low_5
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 284 - 540
Target Start/End: Complemental strand, 40088072 - 40087817
Alignment:
| Q |
284 |
aaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagttt |
383 |
Q |
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| T |
40088072 |
aaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagttt |
40087974 |
T |
|
| Q |
384 |
gagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaat |
483 |
Q |
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| T |
40087973 |
gagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaat |
40087874 |
T |
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| Q |
484 |
ttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
540 |
Q |
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| T |
40087873 |
ttggaggcttgtataccttaatgagtaccacaagtagtcacttctatcagctgtgat |
40087817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 203 - 540
Target Start/End: Complemental strand, 40062311 - 40061970
Alignment:
| Q |
203 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagggtctttgagagtttcaaat-ataaaaaccata- |
299 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| || | ||||||| |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacaggctctttgagactttcaaaacattagaaccataa |
40062212 |
T |
|
| Q |
300 |
--tccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatca |
397 |
Q |
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| T |
40062211 |
aattctagtgaataa-ttacctgcaagctttccgtttacgaaagcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatca |
40062113 |
T |
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| Q |
398 |
tccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtat |
497 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40062112 |
tccttaagatcaacgcttcaaaagaatataatagaagtgttatcgagaagtacagaatcatcgttcagggaaaatatctttcaaatttggaggcttgtat |
40062013 |
T |
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| Q |
498 |
accttaatgagtaccacaagtagtcacttctatcagctgtgat |
540 |
Q |
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| T |
40062012 |
accttaatgagtaccacaagtagtcacttctatcagcggtgat |
40061970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 40093161 - 40092880
Alignment:
| Q |
1 |
aaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattat |
100 |
Q |
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| T |
40093161 |
aaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattat |
40093062 |
T |
|
| Q |
101 |
ttaataattcaagaacttaattgaaacaataaattatgaacatttttaaaaggaacatccatcatcaactctccctccnnnnnnnnnnnnnnnnnnntca |
200 |
Q |
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| T |
40093061 |
ttaataattcaagaacttaattgaaaaaataaattatgaacatttttagaaggaacatccatcatcaactctccct-aaaaaaaataaaaaaaaaaatca |
40092963 |
T |
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| Q |
201 |
acgatcaactcatgttttaacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagggtctttgagagtttc |
283 |
Q |
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| T |
40092962 |
atgatcaactcatgttttaacttgttttaaaatcaacctcgacttcatttgagtttcaataacacaggctctttgagactttc |
40092880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 314 - 538
Target Start/End: Complemental strand, 40080330 - 40080107
Alignment:
| Q |
314 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
413 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||| || |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
|
| Q |
414 |
ttcaaaagaatacaatagaagtgttatcgagaagtacagaatcatcagtcagggaaaatatctttcaaatttggaggcttgtataccttaatgagtacca |
513 |
Q |
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|| |||| ||||||| |||||||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtacataatcatcggtcaaagcaaatatctttcaaatttggaggcttgtgtaccttaatgagtacca |
40080132 |
T |
|
| Q |
514 |
caagtagtcacttctatcagctgtg |
538 |
Q |
| |
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||| || |||||||||||||||||| |
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| T |
40080131 |
caaataatcacttctatcagctgtg |
40080107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 40062495 - 40062329
Alignment:
| Q |
10 |
tgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataatt |
109 |
Q |
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|||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40062495 |
tgattgggatgtccacattaagcttaggtttgtctttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataatt |
40062396 |
T |
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| Q |
110 |
caagaacttaattgaaacaataaattatgaacatttttaaaaggaacatccatcatcaactctccct |
176 |
Q |
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|||||||||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
40062395 |
caagaacttaatggaaacaataaattatgaacatttttggacggaacatccaagatcaactctccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
314 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
385 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||||| || |||||||||||||| |||| |||| |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 534
Target Start/End: Original strand, 22013633 - 22013672
Alignment:
| Q |
495 |
tataccttaatgagtaccacaagtagtcacttctatcagc |
534 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
22013633 |
tataccttaatgagtaccataagtagtcacttctatcagc |
22013672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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