View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_50 (Length: 253)
Name: NF9853_low_50
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45991671 - 45991909
Alignment:
| Q |
1 |
cattcattttgggggtgaaggtacatgaagaagtttggagtggtacaaacatatccatgatgctataagacacctccaacacaccattgatgaatatttt |
100 |
Q |
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| T |
45991671 |
cattcattttgggg-tgaaggtacatgaagaagtttggagtggtacaaacatacccatgatgctataagacacctccaacacaccattgatgaatatttt |
45991769 |
T |
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| Q |
101 |
gttaagtgatccttgttatgaagaaaggaatgcaactgatgaggattgtacaaatgatagagtttagagggtatacaccaatggcaaggactgaaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45991770 |
gttaagtgatccttgttatgaagaaaggaatgcaactgatgaggattgtacaaatgatagagtttagagggtatacaccaatggcaaggactgaaacatg |
45991869 |
T |
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| Q |
201 |
caggctagtgggttccttagcaagtgcaagaggctggtct |
240 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
45991870 |
caggctagtgggttccttagcaagtgcaagaggttggtct |
45991909 |
T |
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