View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_54 (Length: 247)
Name: NF9853_low_54
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_54 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 30025221 - 30024975
Alignment:
| Q |
1 |
gctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatgt |
100 |
Q |
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| T |
30025221 |
gctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatgt |
30025122 |
T |
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| Q |
101 |
aacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgaccaagatttctacgacgttagtcttgtggacggttacaatcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025121 |
aacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgaccaagatttctacgacgttagtcttgtggacggttacaatcttc |
30025022 |
T |
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| Q |
201 |
cattaaccataacgccattaaatggtaacggaaaatgtgaattcgcc |
247 |
Q |
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| T |
30025021 |
cgttaaccataacgccattaaatggtaacggaaaatgtgaattcgcc |
30024975 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 27975688 - 27975645
Alignment:
| Q |
158 |
caagatttctacgacgttagtcttgtggacggttacaatcttcc |
201 |
Q |
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| T |
27975688 |
caagatttctacgacgtgagtctcgtcgacggttacaatcttcc |
27975645 |
T |
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