View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_56 (Length: 241)
Name: NF9853_low_56
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_56 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 243428 - 243576
Alignment:
| Q |
1 |
cacgagtggacggagtaaatgcatgaatttaggtgtctagttttcatttgtgaacaaagacaaacacacacaaaactattag---taataattaagaaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
243428 |
cacgagtggacggagtaaatgcatgaatttaggtgtctagttttcatttgtgaacaaagacaaacacacacaaaactattagtaataataattaagaaaa |
243527 |
T |
|
| Q |
98 |
gaaaaatgcaacgttgacaaattgcaataaatcaatccactagataaga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
243528 |
gaaaaatgcaacgttgacaaattgcaataaatcaatccactagataaga |
243576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 243608 - 243655
Alignment:
| Q |
178 |
acctatggttctttatttaaagcagtgtaccaaagtggcggaaatttc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
243608 |
acctatggttctttatttaaagcagtgtaccaaagtggcggaaatttc |
243655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University