View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_57 (Length: 241)
Name: NF9853_low_57
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 31219118 - 31219257
Alignment:
| Q |
94 |
aatcgtaaagaataacttaatcaagatcattgacacaatatacaaaatttcaaaa--aattgacaatggacaaagatggtgatcgtacttcttcgtttac |
191 |
Q |
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| T |
31219118 |
aatcgtcaagaataacttaatcaagatcattgacacaatatacaaaatttcaaaaaaaattgacaatggacaaagatggtgatcgtacttcttcgtttac |
31219217 |
T |
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| Q |
192 |
cgatgaccaaggagtgtcttctataccttaatgttatata |
231 |
Q |
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| T |
31219218 |
tgatgaccaaggagtgtcttctataccttaatgttatata |
31219257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 31218993 - 31219062
Alignment:
| Q |
16 |
ttttaaacttccttaattgcatatttaatgtaagtgaacaatttaatagaaatatggatatagaccagta |
85 |
Q |
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| T |
31218993 |
ttttaaacttccttaattgcatgtttaatgtaagtgaacaatttaatagaaatatggatatagaccagta |
31219062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 31223044 - 31223122
Alignment:
| Q |
112 |
aatcaagatcattgacacaatatacaaaatttcaaaaaattgacaatggacaaagatggtgatcgtacttcttcgttta |
190 |
Q |
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| T |
31223044 |
aatcaagatcattgacacaatatacaaaatttcacaagattcgcaatggaccaacatggtgattgcacttcttcattta |
31223122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 31222911 - 31222942
Alignment:
| Q |
43 |
atgtaagtgaacaatttaatagaaatatggat |
74 |
Q |
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| T |
31222911 |
atgtaagtgaacaatttaatagaaatatggat |
31222942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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