View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_58 (Length: 241)
Name: NF9853_low_58
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49282088 - 49281867
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttggaggtaatctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaattaata |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49282088 |
gttatgaagtattatctatggcatgtccctttggaggtattctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaattatta |
49281989 |
T |
|
| Q |
101 |
tgatctactaactgattttaatttacggtttatcataaatggttgctgcaatttaagtgggatactggctgttatagacttctagggctgcagttcaggt |
200 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49281988 |
tgatttactaactgattttaatttacagtttatcataaatggttgctgcaatttaagtgggatactggatgttatagacttctagggctgcagttcaggt |
49281889 |
T |
|
| Q |
201 |
ttgttttcaaatatcattcatg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49281888 |
ttgttttcaaatatcattcatg |
49281867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13935758 - 13935979
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttggaggtaatctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaattaata |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
13935758 |
gttatgaagtattatctatggcatgtccctttgcaggtaatctgataaaacttgttttctttgttataatgaaattttctttaatctagtgaaattatta |
13935857 |
T |
|
| Q |
101 |
tgatctactaactgattttaatttacggtttatcataaatggttgctgcaatttaagtgggatactggctgttatagacttctagggctgcagttcaggt |
200 |
Q |
| |
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|||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |
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| T |
13935858 |
tgatttactaactgattgtaatttacagtttatcataaatggttgctgcaatttaagtgggatactagatgttatagacttctagggctccagttcaggt |
13935957 |
T |
|
| Q |
201 |
ttgttttcaaatatcattcatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
13935958 |
ttgttttcaaatatcattcatg |
13935979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13309368 - 13309590
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttggaggtaatctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaa--ttaa |
98 |
Q |
| |
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|||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
13309368 |
gttatgaattattatctatggcatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaattttctttaatctagtgaaaaattat |
13309467 |
T |
|
| Q |
99 |
tatgatctactaactgattttaatttacggtttatcataaatggttgctgcaatttaagtgggatactggctgttatagacttctagggctgcagttcag |
198 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13309468 |
tatgatttactaactaattttaatttacattttatcattaatggttgctgcaatttaagtgggatactggctgttgtagacttctagggctgcagttcag |
13309567 |
T |
|
| Q |
199 |
gtttgttttcaaatatcattcat |
221 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
13309568 |
gtttgttttcaaatatcattcat |
13309590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14592201 - 14591979
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttggaggtaatctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaattaata |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||| || |
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| T |
14592201 |
gttatgaagtattatctatggtatgtctctttgcaagtaatctaataaaacttgctttctttgttataatgaaattt-ctttaatctagtaaaattatta |
14592103 |
T |
|
| Q |
101 |
tgatctactaactgattttaatttacggtttatcataaatggttgctgcaatttaa---gtgggatactggctgttatagacttctagggctgcagttca |
197 |
Q |
| |
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|||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
14592102 |
tgatttactaactagttttaatttatagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagacttctagggctgcagttta |
14592003 |
T |
|
| Q |
198 |
ggtttgttttcaaatatcattcat |
221 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
14592002 |
ggtttgttttcaaatatcattcat |
14591979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 21280552 - 21280336
Alignment:
| Q |
2 |
ttatgaagtattatctatgacatgtccctttggaggtaatctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaattaatat |
101 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||||| ||| |
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|
| T |
21280552 |
ttatgaagtattatctatggcatgtccttttgcaagtaatctgataaaacttgcttgttttgttataatg-aattatctttaatctagtgcaattattat |
21280454 |
T |
|
| Q |
102 |
gatctactaactgattttaatttacggtttatcataaatggttgctgcaatttaagtgggatactggctgttatagacttctag--ggctgcagttcagg |
199 |
Q |
| |
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||| |||||| | |||||| ||| | |||||| | ||||| |||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
21280453 |
gatttactaagtaattttagtttgcagtttatta-aaatgattgctgcaatttcagtgggatttagactgttatagacttctagaaagctgcagttcagg |
21280355 |
T |
|
| Q |
200 |
tttgttttcaaatatcatt |
218 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
21280354 |
tttgttttcaaacatcatt |
21280336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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