View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_59 (Length: 241)
Name: NF9853_low_59
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_59 |
 | |
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| [»] scaffold0576 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0576 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4694 - 4464
Alignment:
| Q |
1 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4694 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
4595 |
T |
|
| Q |
101 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4594 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagacagtatgaagcttactttgaagatctctgcaac |
4495 |
T |
|
| Q |
201 |
aacgattacaactgaaatagtgtcatctctg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
4494 |
aacgattacaactgaaatagtgtcatctctg |
4464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2751852 - 2752082
Alignment:
| Q |
1 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2751852 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
2751951 |
T |
|
| Q |
101 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2751952 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
2752051 |
T |
|
| Q |
201 |
aacgattacaactgaaatagtgtcatctctg |
231 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
2752052 |
aacgattacaactgaaataatgtcatctctg |
2752082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15359710 - 15359480
Alignment:
| Q |
1 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15359710 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
15359611 |
T |
|
| Q |
101 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15359610 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
15359511 |
T |
|
| Q |
201 |
aacgattacaactgaaatagtgtcatctctg |
231 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
15359510 |
aacgattacaactgaaataatgtcatctctg |
15359480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3734243 - 3734013
Alignment:
| Q |
1 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3734243 |
ggatctcaagcaatgtgtttttgtatttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
3734144 |
T |
|
| Q |
101 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3734143 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
3734044 |
T |
|
| Q |
201 |
aacgattacaactgaaatagtgtcatctctg |
231 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
3734043 |
aacgattacaactgaaataatgtcatctctg |
3734013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28658790 - 28658561
Alignment:
| Q |
1 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28658790 |
ggatctcaagcaatgtgtttttgtttttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
28658691 |
T |
|
| Q |
101 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28658690 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaat-cttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
28658592 |
T |
|
| Q |
201 |
aacgattacaactgaaatagtgtcatctctg |
231 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
28658591 |
aatgattacaactgaaatagtgtcatctctg |
28658561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20264958 - 20264731
Alignment:
| Q |
1 |
ggatctcaagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20264958 |
ggatctcaagcaatgtgtttttgtttttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaata |
20264859 |
T |
|
| Q |
101 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20264858 |
aaaaataagctactaagaagtacaaaataatgtcagtgtaaccacttaaat-cttaaaaatgaaagagagtatgaagcttactttgaagatctctgcaac |
20264760 |
T |
|
| Q |
201 |
aacgattacaactgaaatagtgtcatctc |
229 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
20264759 |
aatgattacaactgaaatagtgtcatctc |
20264731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 288709 - 288928
Alignment:
| Q |
8 |
aagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaata |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | ||||||||| | ||||||||||||| |||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
288709 |
aagcaatgtgttttagtttttaatatgaacta--agtataatttaaaaaaaaccagatctctcaaatcaatattagaaaccaaaatttaaatccaaaata |
288806 |
T |
|
| Q |
108 |
agctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttac--tttgaagatctctgcaacaacga |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||| ||||| ||||||||||| || ||| | | |
|
|
| T |
288807 |
agcttctaagaagtacaaaataatgtcagtgtaaacgcttaaatccttaaaaatgaa--agagtatgaaacttactttttgaagatctttgtaactaaaa |
288904 |
T |
|
| Q |
206 |
ttacaactgaaatagtgtcatctc |
229 |
Q |
| |
|
|||| || |||||||||||||||| |
|
|
| T |
288905 |
ttactacagaaatagtgtcatctc |
288928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 18199088 - 18198869
Alignment:
| Q |
8 |
aagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaata |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | ||||||||| | ||||||||||||| |||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
18199088 |
aagcaatgtgttttagtttttaatatgaacta--agtataatttaaaaaaaaccagatctctcaaatcaatattagaaaccaaaatttaaatccaaaata |
18198991 |
T |
|
| Q |
108 |
agctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaaaatgaaagagagtatgaagcttac--tttgaagatctctgcaacaacga |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||| ||||| ||||||||||| || ||| | | |
|
|
| T |
18198990 |
agcttctaagaagtacaaaataatgtcagtgtaaacgcttaaatccttaaaaatgaa--agagtatgaaacttactttttgaagatctttgtaactaaaa |
18198893 |
T |
|
| Q |
206 |
ttacaactgaaatagtgtcatctc |
229 |
Q |
| |
|
|||| || |||||||||||||||| |
|
|
| T |
18198892 |
ttactacagaaatagtgtcatctc |
18198869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 17060295 - 17060241
Alignment:
| Q |
104 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
158 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
17060295 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
17060241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 2271 - 2217
Alignment:
| Q |
104 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
158 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
2271 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
2217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 8873 - 8819
Alignment:
| Q |
104 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
158 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
8873 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
8819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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