View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_64 (Length: 228)
Name: NF9853_low_64
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 15857764 - 15857918
Alignment:
| Q |
18 |
agagacatcactgcaacaacatcaataacacgagagtaacactggagacaggttttgaataaagcagcaatatagacggtaacaccagcactagccgaaa |
117 |
Q |
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| T |
15857764 |
agagacatcactgcaacaacatcaataacaccagtgcaacactatagacaggttttgaataaaacagcaatatagacgataacaccaacactagcagaaa |
15857863 |
T |
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| Q |
118 |
atggaatcagcaacactcagggcaaaattatggacatcaggagtagaaaatatatca |
174 |
Q |
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| T |
15857864 |
acgaaatcagcaaca--cagggcaaaattatggatatcaggaatagaaaatatatca |
15857918 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 15843755 - 15843844
Alignment:
| Q |
122 |
aatcagcaacactcagggcaaaattatggacatca----ggagtagaaaatatatcagatagtatgctcggatcctttttctataatccaac |
209 |
Q |
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| T |
15843755 |
aatcagcaacactc-gggcaaaat-atggacatcaagcaggagtagaaaatttgtcagatattatgctcggactctttttctataatccaac |
15843844 |
T |
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