View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_65 (Length: 227)
Name: NF9853_low_65
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_65 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35228673 - 35228447
Alignment:
| Q |
1 |
atgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacaggaaga |
100 |
Q |
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| T |
35228673 |
atgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaactgtggctgcaatagaaggtattcatcaaataaccacaggaaga |
35228574 |
T |
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| Q |
101 |
ttagtatcactctctgagcaagagctagtggattgtgtgaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgatttcatag |
200 |
Q |
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| T |
35228573 |
ttagtatcactctctgagcaagagctagtggattgtgtcaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgatttcatag |
35228474 |
T |
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| Q |
201 |
ttaaaaaaggaggaataacaagtgaaa |
227 |
Q |
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| T |
35228473 |
ttaaaaaaggaggaataacaagtgaaa |
35228447 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 31176979 - 31176914
Alignment:
| Q |
31 |
tataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacagg |
96 |
Q |
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| T |
31176979 |
tataggtagttgttgggcattttcaactgtggcttccatagagggtatccaccaaataacaacagg |
31176914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 29746533 - 29746586
Alignment:
| Q |
39 |
gttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataacca |
92 |
Q |
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| T |
29746533 |
gttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataacca |
29746586 |
T |
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