View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_66 (Length: 227)
Name: NF9853_low_66
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_66 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30024974 - 30024758
Alignment:
| Q |
1 |
ggttgtgttagggatcttaacgtcatgtgtcccatgagccttcaagttaggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgctt |
100 |
Q |
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| T |
30024974 |
ggttgtgttagggatcttaacgtcatgtgtcccatgagccttcaagttaggtcaagtgacatgaatcaagtggtgggctgtaagagtgcttgttatgctt |
30024875 |
T |
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| Q |
101 |
ttaactcacctaagtattgttgcacgggtagttatggaagcccacaggcttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggc |
200 |
Q |
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| T |
30024874 |
ttaactcacctgagtattgttgcacgggtagttatggaagcccacaggcttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggc |
30024775 |
T |
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| Q |
201 |
ttactcttatgcctttg |
217 |
Q |
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||||||||||||||||| |
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| T |
30024774 |
ttactcttatgcctttg |
30024758 |
T |
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Back To:
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 45273361 - 45273198
Alignment:
| Q |
49 |
aggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacagg |
148 |
Q |
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| T |
45273361 |
aggtcacgtgacaagaagcacgtggtgggttgtagaagtgcttgtgctgctttcaactctcctaggtattgctgtactggtaactttggtaccccacaga |
45273262 |
T |
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| Q |
149 |
cttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgc |
212 |
Q |
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| T |
45273261 |
cctgcaagcccactgcttattcaagaatcttcaaaactgcttgcccaaaggcttactcttatgc |
45273198 |
T |
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