View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_67 (Length: 221)
Name: NF9853_low_67
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 347943 - 348007
Alignment:
| Q |
140 |
gaatattcattatgttgccagtaactatcagatttgagaaaaatgttattgttacatttagtttt |
204 |
Q |
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| T |
347943 |
gaatattcattatgttgccagtaactatcagatttgagaaaaatgttattgttacatttagtttt |
348007 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 347817 - 347884
Alignment:
| Q |
11 |
tagcaaaggccaaatagaaccaaatcatataacttcctctaatnnnnnnncaaaccatataacttgcatc |
80 |
Q |
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| T |
347817 |
tagcaaagtccaaatagaaccaaatcatataacttcctctaat--aaaaacaaaccatataacttgcatc |
347884 |
T |
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