View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_7 (Length: 542)
Name: NF9853_low_7
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 21 - 532
Target Start/End: Complemental strand, 2800544 - 2800033
Alignment:
| Q |
21 |
aacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
2800544 |
aacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttatgtcttaccgt |
2800445 |
T |
|
| Q |
121 |
cgatatccctctccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2800444 |
cgatatccctctccagagtgacacatattgttataacctcaccagtccggacactgtcattttgcaggacttcatacaacaaatcaacattaggaaagcg |
2800345 |
T |
|
| Q |
221 |
attacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2800344 |
attacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttct |
2800245 |
T |
|
| Q |
321 |
atactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtca |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800244 |
atactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtca |
2800145 |
T |
|
| Q |
421 |
ccatttgactaacttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaa |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2800144 |
acatttgactaacttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaa |
2800045 |
T |
|
| Q |
521 |
cacctctctctg |
532 |
Q |
| |
|
|||||||||||| |
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|
| T |
2800044 |
cacctctctctg |
2800033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 21 - 532
Target Start/End: Original strand, 1680184 - 1680695
Alignment:
| Q |
21 |
aacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
1680184 |
aacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttttgtcttaccgt |
1680283 |
T |
|
| Q |
121 |
cgatatccctctccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcg |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
1680284 |
cgatatccctctccagagtgacacttattgttatatcctcaccagtccggacactgtcattttgcaggacttcatactacaaatcaacattaggaaagcg |
1680383 |
T |
|
| Q |
221 |
attacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1680384 |
attacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttct |
1680483 |
T |
|
| Q |
321 |
atactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtca |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1680484 |
atactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtca |
1680583 |
T |
|
| Q |
421 |
ccatttgactaacttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaa |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1680584 |
tcatttgactaacttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccaatgcctgaagcagtttatttgcagaaagcaa |
1680683 |
T |
|
| Q |
521 |
cacctctctctg |
532 |
Q |
| |
|
|||||||||||| |
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|
| T |
1680684 |
cacctctctctg |
1680695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 26 - 532
Target Start/End: Complemental strand, 29269715 - 29269209
Alignment:
| Q |
26 |
gttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgata |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||| | ||||| || | | |
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|
| T |
29269715 |
gttggttttggtatcaccaacaacaagccaccacccttcttccttggctttcggatacctaggagcatcaacaggtcctacttctgttttaccttcaaga |
29269616 |
T |
|
| Q |
126 |
tccctctccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattac |
225 |
Q |
| |
|
|||| ||| |||||||| || ||||||| | || |||| || ||| |||| || | ||||| || || |||| ||||| ||||||||| || || | |
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|
| T |
29269615 |
tcccgctcaagagtgacctgtagtgttatatcatccccagctcgcacattgtcgttgtccaggatctcgtatgacagatcaatattaggaaaacggttgc |
29269516 |
T |
|
| Q |
226 |
aaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatact |
325 |
Q |
| |
|
|||| |||||||| || || | | |||| || |||||| |||||||| || || || |||||||||||| ||||||||||| | ||||||||||| |
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|
| T |
29269515 |
aaaaccgagcaatatccaaaagctgagaatctgtcatgttcaacaattcccgtctctcatcatcttccatctctaataaatcaaataccgtttctatact |
29269416 |
T |
|
| Q |
326 |
cttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatt |
425 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||||||||||||| || ||||| |||||||||||||| || || |||||| |||||| || |||||| |
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|
| T |
29269415 |
cctccctgggttctcctggcatttcttagctaaatcctttgtgaagtgtggaagctgtagcagcatagaatctcgctcccacattccttgggttaccatt |
29269316 |
T |
|
| Q |
426 |
tgactaacttccatagcaagaagagccaaactcagccaaccattgctcgatattacatccaccattgcctgaagcagtttatttgcagaaagcaacacct |
525 |
Q |
| |
|
|| || || ||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || || | ||||||||||||| |||| |
|
|
| T |
29269315 |
tggcttacctccatggcaagaagagccatgctcagccaaccgttgctcgatattacatcaaccattgcctgcagaagcctgtttgcagaaagcagtacct |
29269216 |
T |
|
| Q |
526 |
ctctctg |
532 |
Q |
| |
|
| ||||| |
|
|
| T |
29269215 |
ccctctg |
29269209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 253 - 489
Target Start/End: Complemental strand, 40469833 - 40469599
Alignment:
| Q |
253 |
aatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttctt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| | |
|
|
| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatcttccatctccaataaatcaaagatggcttctatactcgtccatgagttctcctcgcatttcct |
40469734 |
T |
|
| Q |
353 |
agccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttgtgtcaccatttgactaacttccatagcaagaagagcc |
452 |
Q |
| |
|
| ||||||| |||||||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
40469733 |
acccaaatcttttgtgaagtgaggaagtcgtagctgcatagagtcgcatccccacaatccttgtgtcaccatttgactaacttcc--aacaagaagagcc |
40469636 |
T |
|
| Q |
453 |
aaactcagccaaccattgctcgatattacatccacca |
489 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40469635 |
aaactcaggcaaccattgcttgatattacatccacca |
40469599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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