View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_71 (Length: 201)
Name: NF9853_low_71
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 11658287 - 11658454
Alignment:
| Q |
14 |
cagagaaaagtttgaagcgtaaggaacatgcatccatggcagaatgggaagcgtaactgaatcgtcgtaacaaccttcttctcatataaggatctgatac |
113 |
Q |
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| T |
11658287 |
cagagaaaagtttgaagcgtaaggaacatgcatccatggcagaattc--agcgtaactgaatcgt---aacaaccttcttctcatataaggatctgatac |
11658381 |
T |
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| Q |
114 |
catattaagaaagtgaattgagaatcctaaaagacaaaatgaagaacattgtgaaagaaattctgttattcat |
186 |
Q |
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| T |
11658382 |
catattaagaaagtgaattgagaatcctaaaagagaaaatgaagaacattgtgaaagaaattctgttattcat |
11658454 |
T |
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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 14931914 - 14931985
Alignment:
| Q |
115 |
atattaagaaagtgaattgagaatcctaaaagacaaaatgaagaacattgtgaaagaaattctgttattcat |
186 |
Q |
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|||||||||||||||||||||||| ||| |||| ||||| ||| ||| ||||||||||||||||||||||| |
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| T |
14931914 |
atattaagaaagtgaattgagaattctagaagagaaaattgagagcatagtgaaagaaattctgttattcat |
14931985 |
T |
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