View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_8 (Length: 532)
Name: NF9853_low_8
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 23 - 525
Target Start/End: Complemental strand, 47262461 - 47261959
Alignment:
| Q |
23 |
tactacttatttctacggtggagccaacggtgttgatcatcttacgccgccggtgtttgatcagatcgttgatggaacgttatggagtgtggtgaatact |
122 |
Q |
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| T |
47262461 |
tactacttatttctacggtggagtcaacggtgttgatcatcctacgccgccggtgtttgatcagatcattgatggaacgttatggagtgtggtgaatact |
47262362 |
T |
|
| Q |
123 |
acggtggattatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagttatacgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262361 |
acggtggattatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagttatacgg |
47262262 |
T |
|
| Q |
223 |
attctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggttgctag |
322 |
Q |
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| T |
47262261 |
attctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggttgctag |
47262162 |
T |
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| Q |
323 |
aaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatctttatgtg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47262161 |
aaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatctttatttg |
47262062 |
T |
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| Q |
423 |
gttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctatcctatg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262061 |
gttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctatcctatg |
47261962 |
T |
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| Q |
523 |
cta |
525 |
Q |
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| T |
47261961 |
cta |
47261959 |
T |
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