View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_9 (Length: 511)
Name: NF9853_low_9
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 273 - 497
Target Start/End: Original strand, 43700638 - 43700862
Alignment:
| Q |
273 |
aatggctgaagaattcgtcaaaggcaccgttaattctaacggtgttgcccttcttacactcgatcgccccaaagctctcaacgccatgaacctaggtttc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43700638 |
aatggctgaagaattcgtcaaaggcaccgttaattctaacggtgttgcccttcttacactcgatcgtcccaaagctctcaacgccatgaacctaggtttc |
43700737 |
T |
|
| Q |
373 |
ttattttctttcattcattttattgcacttttcgtataattctgtctgatttatcttatgcagttctgaatttcttcaaaatttgggttattttgattca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43700738 |
ttattttctttcattcattttattgcacttttcgtataattctgtctgatttatcttatgcagttctgaatttcttcaaaatttgggttattttgattca |
43700837 |
T |
|
| Q |
473 |
tattttaatgaaaggatgattctag |
497 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
43700838 |
tattttaatggaaggatgattctag |
43700862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 43700377 - 43700569
Alignment:
| Q |
12 |
aagcagagaaaagtagatggtgataaataggaagaaaaaggaggggctaaaaagtcagaacgcaataaatgtatgatgtcgttaactaaacataagaaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43700377 |
aagcagagaaaagtagatggtgataaataggaagaaaaaggaggggctaaaaagtcagaacgcaataaatgtatgatgtcgttaactaaacataagaaca |
43700476 |
T |
|
| Q |
112 |
aagtatgaaccaaccaaccaacggcatcacaggaaaagaatgctactacttcgtactgtcgtagctaatcgttttgttctcagttcatttgca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43700477 |
aagtatgaaccaaccaaccaacggcatcacaggaaaagaatgctactacttcgtactgtcgtagctaatcgttttgttctcagttcatttgca |
43700569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University