View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_high_1 (Length: 265)
Name: NF9854_high_1
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 54733504 - 54733266
Alignment:
| Q |
17 |
aaaggtttaaccttagtttacaatccaattttcacacaaattacatacacagattagctaggaataaatatggtttgtacttcatttattcgtagcttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54733504 |
aaaggtttaaccttagtttacaatccaattttcaaacaaattacatacacagattagctaggaataaatatggtttgtacttcatttattcgtagcttcc |
54733405 |
T |
|
| Q |
117 |
gttgtcttgcaatgaatgcctccacggtgcgacgaaattcgtcgctgctcattccatcttcgggatataaactccattttttctctttatcaacttcaat |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54733404 |
gttgtcttgcaatgaatgcctccaccgtgcgacgaaattcgtcgctgctcattccatcttcaggatataaactccattttttctctttatcaacttcaat |
54733305 |
T |
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| Q |
217 |
gtttttcctcttactcttatcattatcactctcacacct |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
54733304 |
gtttttcctcttactcttatcattatcactctcacacct |
54733266 |
T |
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