View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9854_low_1 (Length: 473)

Name: NF9854_low_1
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9854_low_1
NF9854_low_1
[»] chr7 (1 HSPs)
chr7 (18-457)||(44111975-44112415)
[»] chr3 (3 HSPs)
chr3 (167-452)||(38896488-38896773)
chr3 (160-248)||(36153989-36154077)
chr3 (18-73)||(38896854-38896909)
[»] chr2 (2 HSPs)
chr2 (167-452)||(24324482-24324767)
chr2 (18-73)||(24324331-24324386)
[»] scaffold0631 (1 HSPs)
scaffold0631 (167-452)||(7315-7600)
[»] chr4 (1 HSPs)
chr4 (166-439)||(13102706-13102979)
[»] chr8 (1 HSPs)
chr8 (187-439)||(16797267-16797519)
[»] chr1 (3 HSPs)
chr1 (184-336)||(19256485-19256637)
chr1 (166-248)||(47723007-47723089)
chr1 (166-248)||(47729999-47730081)
[»] chr6 (1 HSPs)
chr6 (370-434)||(2269460-2269524)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 44111975 - 44112415
Alignment:
Q  18 atgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtgtgttggccatttatatattcattgcatgannnnnnnn-atttct 116  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||         |||||     
T  44111975 atgagctttgtttgaaataccacacttacatggtcgaaatggacgttgactatgtgtgttagccatttatttattcattgcatgatttttttttatttca 44112074  T
Q  117 catgttggatttaattgtgtgcatatatgaattacaacatctttttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112075 catgttggatttaattgtgtgcatatatgaattacaacatctttttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccag 44112174  T
Q  217 atccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagatattagtagagaggaacaaccagggaatttatctgactatgagatgacatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44112175 atccaacaatatgcaacgttggtggatccaaagaacaatcaatttgagatattagtagagaggaacaaccagggaatttatctgactatgggatgacatg 44112274  T
Q  317 ctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaa 416  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112275 ctttccgtgatttctacaagttagcgcttggtgcttggattaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaa 44112374  T
Q  417 gaggattcgctacccaacttttactccacctatggactagg 457  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44112375 gaggattcgctacccaacttttactccacctatggactagg 44112415  T

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Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 38896773 - 38896488
Alignment:
Q  167 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagat 266  Q
    |||||||| | |||||||| |||||||| ||| |||| |||| |||||| || || |||| |||| |  ||||||||||||| ||||||||||  ||  |    
T  38896773 agggtgcaataatgcttcctatgatgttttcgaatgattttggagaccaaatacagcaatgtgcagctctggtggatccaaacaacaatcaattcgaagt 38896674  T
Q  267 attagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtt 366  Q
     || || ||||| ||||| ||||| ||||||||||||  | | || || ||| | |||||||| |||||||||   ||||||||||| ||||| |||||     
T  38896673 cttggtggagagaaacaatcaggggatttatctgacttggggctggcacgctatgcgtgatttttacaagttacatcttggtgcttggattacaattgtc 38896574  T
Q  367 tggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatgga 452  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| ||||| |||||    
T  38896573 tggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccaccaatgga 38896488  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 36153989 - 36154077
Alignment:
Q  160 tttactcagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 248  Q
    ||||| ||||||||  ||||||| ||||||||||| || ||||| |||| |||||||||||| ||||| || ||  |||| ||||||||    
T  36153989 tttacacagggtgctattatgctgccaatgatgttttcccatgattttggagaccagatccatcaatacgctactctggtagatccaaa 36154077  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 38896909 - 38896854
Alignment:
Q  18 atgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtg 73  Q
    |||| |||||||||||||||||||| || ||||| || ||||||||||| ||||||    
T  38896909 atgaccttcgtttgaaataccgcacctatatggttgagatggacgttgattatgtg 38896854  T

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Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 167 - 452
Target Start/End: Original strand, 24324482 - 24324767
Alignment:
Q  167 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagat 266  Q
    |||||||| | ||| |||| |||||||| ||| |||| |||| ||||||||| || |||| ||||||  ||||||||||||| ||||||||||  ||  |    
T  24324482 agggtgcaataatgattcctatgatgttttcgaatgattttggagaccagatgcagcaatgtgcaactctggtggatccaaacaacaatcaattcgaagt 24324581  T
Q  267 attagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtt 366  Q
      | || ||||||||||| ||||| |||||||| |||| | | || || ||| | |||||||| |||||||||   ||||||||||| || || |||||     
T  24324582 cctggtggagaggaacaatcaggggatttatctaactaggggttggcacgctatgcgtgatttttacaagttacatcttggtgcttggataacaattgtc 24324681  T
Q  367 tggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatgga 452  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| ||||| |||||    
T  24324682 tggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccaccaatgga 24324767  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 24324331 - 24324386
Alignment:
Q  18 atgagcttcgtttgaaataccgcacttacatggtcgaaatggacgttgactatgtg 73  Q
    |||| |||||||||||||||||||| || ||||| || ||||||||||| ||||||    
T  24324331 atgaccttcgtttgaaataccgcacctatatggttgagatggacgttgattatgtg 24324386  T

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Target: scaffold0631 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 167 - 452
Target Start/End: Complemental strand, 7600 - 7315
Alignment:
Q  167 agggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagat 266  Q
    |||||||| | ||| |||| |||||||| |||  |||||||| |||||| || || |||| ||||||  ||||||||||||| ||||||||||  ||  |    
T  7600 agggtgcaataatgattcctatgatgttttcgagtgactttggagaccaaatacagcaatgtgcaactctggtggatccaaacaacaatcaattcgaagt 7501  T
Q  267 attagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtt 366  Q
      | || ||||| ||||| ||||| ||||||||||||| | | ||||| | | | |||||||| |||||||||   ||||||||||| ||||  |||||     
T  7500 cctggtggagagaaacaatcaggggatttatctgactaggggctgacacgttatgcgtgatttttacaagttacatcttggtgcttggattaaaattgtc 7401  T
Q  367 tggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatgga 452  Q
    ||||||||  ||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| ||||| |||||    
T  7400 tggatgggagatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccaccaatgga 7315  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 439
Target Start/End: Complemental strand, 13102979 - 13102706
Alignment:
Q  166 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgaga 265  Q
    ||||||||  ||||| | || |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||| ||||||||   |||||| | |||      
T  13102979 cagggtgctattatgttgcctatgatgttttcccatgattttggagaccagatccaacaatatgctactctggttgatccaaaacgcaatcagtttgaag 13102880  T
Q  266 tattagtagagaggaacaaccagggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgt 365  Q
    |  | || || ||||| |||||||| |||||| | || | | | ||||| ||| ||||||||||||| ||  |   | ||||| | ||  |||| |||||    
T  13102879 tgctggttgaaaggaataaccaggggatttatttaacaaagggttgacacgctatccgtgatttctataaagtgcagtttggttcctgggttacaattgt 13102780  T
Q  366 ttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta 439  Q
     |  ||||| |||||||||||| |||||||| |||| || |||||||| ||||| ||||| |||||||| ||||    
T  13102779 gtttatgggaaatggaaggtttaatattagaatcaagaacaggtttggtaagagaattcgttacccaaccttta 13102706  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 439
Target Start/End: Original strand, 16797267 - 16797519
Alignment:
Q  187 atgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagatattagtagagaggaacaacc 286  Q
    |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||||||||||||   |||||| | |||  |  | || || ||||| ||||    
T  16797267 atgatgttttcccatgattttggagaccagatccaacaatatgctactctggtggatccaaaatgcaatcagtttgaagtgctggttgaaaggaataacc 16797366  T
Q  287 agggaatttatctgactatgagatgacatgctttccgtgatttctacaagttagcgcttggtgcttgaattaccattgtttggatggggaatggaaggtt 386  Q
    | || |||||| | || | | | ||||| ||| ||||||||||||||||  |   | ||||| | ||  |||| ||||| |  ||||| |||||||||||    
T  16797367 aagggatttatttaacaaagggctgacacgctatccgtgatttctacaaagtgcagtttggttcctgggttacaattgtgtttatgggaaatggaaggtt 16797466  T
Q  387 tgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta 439  Q
    |||||||||| |||| || | |||||| || || ||||| |||||||| ||||    
T  16797467 tgatattagaatcaagaacatgtttggtaatagaattcgttacccaaccttta 16797519  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 336
Target Start/End: Complemental strand, 19256637 - 19256485
Alignment:
Q  184 ccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaagaacaatcaatctgagatattagtagagaggaaca 283  Q
    |||||||||||||| ||||| |||   |||||||| || |||||||||||  |  | || || || ||||||| || |||| |||| || || ||||| |    
T  19256637 ccaatgatgttctcacatgattttagggaccagatacatcaatatgcaacccttattgaccccaacaacaatcgatttgaggtattggtggaaaggaata 19256538  T
Q  284 accagggaatttatctgactatgagatgacatgctttccgtgatttctacaag 336  Q
    || |||||||||||||||||| | | || |||||| | |||||||||||||||    
T  19256537 actagggaatttatctgactaagggttggcatgctattcgtgatttctacaag 19256485  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 47723007 - 47723089
Alignment:
Q  166 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 248  Q
    ||||||||  ||||| | || |||||||| || ||||| |||| ||||||||||||||||||||| ||  |||||||||||||    
T  47723007 cagggtgctattatgttgcccatgatgttttcccatgattttggagaccagatccaacaatatgctactctggtggatccaaa 47723089  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 47729999 - 47730081
Alignment:
Q  166 cagggtgcagttatgcttccaatgatgttctcgcatgactttgaagaccagatccaacaatatgcaacgttggtggatccaaa 248  Q
    ||||||||  ||||| | ||||||||||| || ||||| |||| ||||||||||||||||||||| ||  |||| ||||||||    
T  47729999 cagggtgctattatgatgccaatgatgttttcccatgattttggagaccagatccaacaatatgctactctggtagatccaaa 47730081  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 2269524 - 2269460
Alignment:
Q  370 atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaac 434  Q
    ||||| ||||||||||||||||||| | |||| || |||||||| ||||| ||||| ||||||||    
T  2269524 atgggaaatggaaggtttgatattataatcaagaacaggtttggtaagagaattcgttacccaac 2269460  T

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