View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_11 (Length: 238)
Name: NF9854_low_11
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28904410 - 28904634
Alignment:
| Q |
1 |
tttataaacacattttgtagttcttgaaaggaaacatccatgatcagttatatgacatagtttgcaaattagataacaagtggctagatgtataagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28904410 |
tttataaacacattttgtagttcttgaaaggaaacatccatgatcagttatatgacatagtttgcaaattagataacaagtggctagatgtataagaaaa |
28904509 |
T |
|
| Q |
101 |
ttagactctggatttagctctatgcaaatgattctcaataatgctgtaaataaaaacagcaagttgaaaacatagaaacgaacaaaaatatttttaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28904510 |
ttagactctggatttagctctatgcaaatgattctcaataatgctgtaaataaaaacagcaagttgaaaacatagaaacgaacaaaaatatttttaaaga |
28904609 |
T |
|
| Q |
201 |
gcc--agagagagaggttttacaat |
223 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
28904610 |
gccagagagagagaggttttacaat |
28904634 |
T |
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