View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_12 (Length: 238)
Name: NF9854_low_12
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28904377 - 28904151
Alignment:
| Q |
1 |
tgggattcatgatttgaaactcaagatttactatttccagtttaaattttcttttctaaaggacttatgttctcgaaaatgaaaagcacaatcggnnnnn |
100 |
Q |
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| T |
28904377 |
tgggattcatgatttgaaactcaagatttactatttccagtttaaattttcttttctaaaggacttatgttctcgaaaatgaaaagcacaatcggaaaaa |
28904278 |
T |
|
| Q |
101 |
nnnctgataatataagaagccaaattatttttctgagctatggataggattacaaaataaaaggtttagaatagcttttgaggtgtcttttcatttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28904277 |
aa-ctgataatataagaagccaaattatttttctgagctatggataggattacaaaataaaaggtttagaatagcttttgaggtgtcttttcatttgttg |
28904179 |
T |
|
| Q |
201 |
aggacatctgttaatctcttcactggtg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28904178 |
aggacatctgttaatctcttcactggtg |
28904151 |
T |
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