View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_13 (Length: 238)
Name: NF9854_low_13
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33950200 - 33949978
Alignment:
| Q |
1 |
aatgctctcaaaaagggcagaaggtttgttcaacagatgattattattatttactttcattttatgttcttgaatcaattttaaattttatatgcagagt |
100 |
Q |
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| T |
33950200 |
aatgctctcaaaa-gggcagaaggtttgttcaacagatgattattattatttactttcattttatgttcttgaatcaattttaaattttatatgcagagt |
33950102 |
T |
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| Q |
101 |
taatcaacgtggagcagaagcagggtgctcttcagacgctgcacgatgttattacttcgaaaagataccgatcatggcaggaaatacaagaaaagattat |
200 |
Q |
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| T |
33950101 |
taatcaatgtggagcagaagcagggtgctcttcagacgctgcacgatgttattacttcgaaaagataccgatcatggcaggaaatacaagaaaagattat |
33950002 |
T |
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| Q |
201 |
gtttaagtatgtagagttgtgtgt |
224 |
Q |
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| T |
33950001 |
gtttaagtatgtagagttgtgtgt |
33949978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 40163937 - 40163820
Alignment:
| Q |
95 |
cagagttaatcaacgtggagcagaagcagggtgctcttcagacgctgcacgatgttattacttcgaaaagataccgatcatggcaggaaatacaagaaaa |
194 |
Q |
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| T |
40163937 |
cagagttgatcaatgtcgggcagaagcaggatgctcttcagactctgcacgacctgatcacttcgaaaagatatcgcgcatggcagaaaacactggagag |
40163838 |
T |
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| Q |
195 |
gattatgtttaagtatgt |
212 |
Q |
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| T |
40163837 |
aattatgtttaagtatgt |
40163820 |
T |
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