View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_14 (Length: 233)
Name: NF9854_low_14
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33950449 - 33950668
Alignment:
| Q |
1 |
cgtttttcggtgagtttttgttgtgatacggcgagttgagttgttttagggtttaggaaacgagggtaactctgcaatttgtgttattttatagttttat |
100 |
Q |
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| T |
33950449 |
cgtttttcggtgagtttttgttgttatacggcgagttgagttgttttagggtttaggaaacgagggtaactctgcaatttgtgttattttatagttttat |
33950548 |
T |
|
| Q |
101 |
ttgcaaacgatttgatgggcctctctgcaaaattaaccggattgggctttatattgcaattttatcttgaaaaatagattaccgttgcttttcccactct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33950549 |
ttgcaaacgatttgatgggcctctctgcaaaattaaccggattgggctttatattgcaattttatcttgaaaaatagattaccgttacttttcccactct |
33950648 |
T |
|
| Q |
201 |
acagccttctcgcgcgccct |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
33950649 |
acagccttctcgcgcgccct |
33950668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 41258087 - 41258055
Alignment:
| Q |
188 |
cttttcccactctacagccttctcgcgcgccct |
220 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
41258087 |
cttttcccaccctacagccttctcgcgcgccct |
41258055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 38218699 - 38218667
Alignment:
| Q |
188 |
cttttcccactctacagccttctcgcgcgccct |
220 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
38218699 |
cttttcccaccctacagccttctcgcgcgccct |
38218667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 38618751 - 38618783
Alignment:
| Q |
188 |
cttttcccactctacagccttctcgcgcgccct |
220 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
38618751 |
cttttcccaccctacagccttctcgcgcgccct |
38618783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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