View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_16 (Length: 227)
Name: NF9854_low_16
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_16 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 44112461 - 44112673
Alignment:
| Q |
5 |
tgaccatttttacatgatgagtttaactttcaacttacctatgagaagaagcttggttatgaggacgttacctctagcttgctggtatgctttgattcat |
104 |
Q |
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| T |
44112461 |
tgaccatttttacatgatgagtttaactttcaacttacctatgagaagaagcttggttatgaggacgttacctctagcttgctggtatgctttgattcat |
44112560 |
T |
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| Q |
105 |
tttacgtgttataagagtaagacttggtgtaaataactaatcatatttaactaatcaaatgttttgtaatgttgaaaacattaacgaattgtgtttgtta |
204 |
Q |
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| T |
44112561 |
tttacgtgttataagagtaagacttggtgtaaataactaatcatatttaactaatcaaatgttctgtaatgttgaaaacattaacgaattgtgtttgtta |
44112660 |
T |
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| Q |
205 |
acttttgcctatg |
217 |
Q |
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| T |
44112661 |
acttttgcctatg |
44112673 |
T |
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Target: scaffold0631 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 7250 - 7198
Alignment:
| Q |
17 |
catgatgagtttaactttcaacttacctatgagaagaagcttggttatgagga |
69 |
Q |
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| T |
7250 |
catgatgagtataactttcagcttacctatgagaagaagcttggttatgagga |
7198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38896422 - 38896377
Alignment:
| Q |
17 |
catgatgagtttaactttcaacttacctatgagaagaagcttggtt |
62 |
Q |
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| T |
38896422 |
catgatgagtataactttcagcttacctatgagaagaagcttggtt |
38896377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 24324832 - 24324884
Alignment:
| Q |
17 |
catgatgagtttaactttcaacttacctatgagaagaagcttggttatgagga |
69 |
Q |
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| T |
24324832 |
catgatgagtataactttcaacttacatatgagaagaaacttggttgtgagga |
24324884 |
T |
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