View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9854_low_17 (Length: 225)

Name: NF9854_low_17
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9854_low_17
NF9854_low_17
[»] chr5 (2 HSPs)
chr5 (91-225)||(1501184-1501320)
chr5 (183-225)||(38951537-38951579)
[»] chr3 (3 HSPs)
chr3 (99-171)||(13822988-13823060)
chr3 (120-171)||(4264452-4264503)
chr3 (190-225)||(49786540-49786575)
[»] chr7 (4 HSPs)
chr7 (99-169)||(12103200-12103270)
chr7 (120-171)||(41546047-41546098)
chr7 (190-225)||(31427168-31427203)
chr7 (192-225)||(23844782-23844815)
[»] chr4 (3 HSPs)
chr4 (119-171)||(14056243-14056295)
chr4 (120-171)||(55039345-55039396)
chr4 (192-225)||(49866786-49866819)
[»] chr1 (5 HSPs)
chr1 (119-171)||(25871704-25871756)
chr1 (120-171)||(19151991-19152042)
chr1 (120-171)||(23679050-23679101)
chr1 (101-166)||(38245591-38245656)
chr1 (119-171)||(17224166-17224218)
[»] chr8 (2 HSPs)
chr8 (120-171)||(31386901-31386952)
chr8 (192-225)||(3780278-3780311)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 1501184 - 1501320
Alignment:
Q  91 ttgggctgttttttaattattaatgacattgccaca--taagggtggtagaaggtgtattgccacctatggtggtatacctataaggactcaaaaattat 188  Q
    ||||| ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501184 ttgggttgtttgttaattattaatgacattgccacacataagggtggtagaaggtgtattgccacctatggtggtatacctataaggactcaaaaattat 1501283  T
Q  189 ggaaaaatgattgatagaccactcatattttcatacc 225  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1501284 ggaaaaatgattggtagaccactcatattttcatacc 1501320  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 38951579 - 38951537
Alignment:
Q  183 aattatggaaaaatgattgatagaccactcatattttcatacc 225  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  38951579 aattattgaaaaatgattgatagaccactcatattttcatacc 38951537  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 13822988 - 13823060
Alignment:
Q  99 ttttttaattattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||| |||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13822988 tttttttattattaattgtattgccacataagggtggtataaggtgtattgccacctatggtggtatacctat 13823060  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 4264503 - 4264452
Alignment:
Q  120 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  4264503 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 4264452  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 49786575 - 49786540
Alignment:
Q  190 gaaaaatgattgatagaccactcatattttcatacc 225  Q
    |||||||||||| |||||||||||||||||||||||    
T  49786575 gaaaaatgattggtagaccactcatattttcatacc 49786540  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 12103270 - 12103200
Alignment:
Q  99 ttttttaattattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtatacct 169  Q
    |||||| |||||||||   ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  12103270 tttttttattattaattgtattgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 41546098 - 41546047
Alignment:
Q  120 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  41546098 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 41546047  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 31427168 - 31427203
Alignment:
Q  190 gaaaaatgattgatagaccactcatattttcatacc 225  Q
    |||||||||||| |||||||||||||||||||||||    
T  31427168 gaaaaatgattggtagaccactcatattttcatacc 31427203  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 23844815 - 23844782
Alignment:
Q  192 aaaatgattgatagaccactcatattttcatacc 225  Q
    ||||||||||||| ||||||||||||||||||||    
T  23844815 aaaatgattgataaaccactcatattttcatacc 23844782  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 14056243 - 14056295
Alignment:
Q  119 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  14056243 ttgccacacaagggtggtataaggtgtattgccacctatggtggtacacctat 14056295  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 55039396 - 55039345
Alignment:
Q  120 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  55039396 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 55039345  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 49866819 - 49866786
Alignment:
Q  192 aaaatgattgatagaccactcatattttcatacc 225  Q
    |||||||||| |||||||||||||||||||||||    
T  49866819 aaaatgattggtagaccactcatattttcatacc 49866786  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 25871756 - 25871704
Alignment:
Q  119 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  25871756 ttgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctat 25871704  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 19151991 - 19152042
Alignment:
Q  120 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  19151991 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 19152042  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 23679050 - 23679101
Alignment:
Q  120 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  23679050 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 23679101  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 38245591 - 38245656
Alignment:
Q  101 ttttaattattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtata 166  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||||||||||  || |||||||||    
T  38245591 tttttattattaatgatattgccacacaagggtggtacaaggtgtattgccatgtacggtggtata 38245656  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 17224218 - 17224166
Alignment:
Q  119 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    |||||||| || ||||||| |||||||||||||||||||||||||| ||||||    
T  17224218 ttgccacacaaaggtggtataaggtgtattgccacctatggtggtacacctat 17224166  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 31386952 - 31386901
Alignment:
Q  120 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 171  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  31386952 tgccacataagagtggtataaggtgtgttgccacctatggtggtacacctat 31386901  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 3780278 - 3780311
Alignment:
Q  192 aaaatgattgatagaccactcatattttcatacc 225  Q
    |||||||||| |||||||||||||||||||||||    
T  3780278 aaaatgattggtagaccactcatattttcatacc 3780311  T

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