View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9854_low_18 (Length: 210)
Name: NF9854_low_18
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 9355921 - 9356029
Alignment:
| Q |
27 |
atcaaacattgcttctaattaagcatcccttagctagtcagtcactcttagtctgatgtaaaccaaccc------ggaaatgttctgcatccaaagctga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9355921 |
atcaaacattgcttctaattaagcatcccttagctagtcaatcactcttagcctgttgtaaaccaaccccttgcaggaaatgttctgcatccaaagctgc |
9356020 |
T |
|
| Q |
121 |
gagcaccct |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
9356021 |
aagcaccct |
9356029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 9346511 - 9346619
Alignment:
| Q |
27 |
atcaaacattgcttctaattaagcatcccttagctagtcagtcactcttagtctgatgtaaaccaaccc------ggaaatgttctgcatccaaagctga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9346511 |
atcaaacattgcttctaattaagcatcccttatctagtcaatcactcttagcctgttgtaaaccaaccccttgcaggaaatgttctgcatccaaagctgc |
9346610 |
T |
|
| Q |
121 |
gagcaccct |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
9346611 |
aagcaccct |
9346619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 9419599 - 9419671
Alignment:
| Q |
122 |
agcaccctgcaccaaaaaacaagacctccatatcatttaaggatataaactcttttgaaacacaacctatctct |
195 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||| ||||||| |||||| |||| |
|
|
| T |
9419599 |
agcaccctgcaccaaaa-acaagacctctatatcatttcaggatataaacgcttctgaaacataacctaactct |
9419671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 9401110 - 9401183
Alignment:
| Q |
122 |
agcaccctgcaccaaaaaacaagacctccatatcatttaaggatataaactcttttgaaacacaacctatctctg |
196 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||| ||||||||||||||| ||||| | |||||| ||||| |
|
|
| T |
9401110 |
agcatcctgcaccaaaa-acaagacctctatatcatttcaggatataaactcttctgaaagataacctaactctg |
9401183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 9412141 - 9412213
Alignment:
| Q |
122 |
agcaccctgcaccaaaaaacaagacctccatatcatttaaggatataaactcttttgaaacacaacctatctct |
195 |
Q |
| |
|
||||||| |||||||||| ||||| ||| ||||||||| ||||||||||| ||| ||||||| |||||| |||| |
|
|
| T |
9412141 |
agcacccagcaccaaaaa-caagatctctatatcatttcaggatataaacgcttctgaaacataacctaactct |
9412213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 18583929 - 18583869
Alignment:
| Q |
136 |
aaaaacaagacctccatatcatttaaggatataaactcttttgaaacacaacctatctctg |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
18583929 |
aaaaacaagacctctatatcatttaaggatataaactcttttgaaacataatctaactctg |
18583869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 10064114 - 10064230
Alignment:
| Q |
56 |
ttagctagtcagtcactcttagtctgatgtaaaccaaccc------ggaaatgttctgcatccaaagctgaga-gcaccctgcaccaaaaaacaagacct |
148 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||||||||||| | |||||||||| | |||||||||| || |
|
|
| T |
10064114 |
ttagctagtcaatcactcttatcctgctgtaaaccaactccttgcaggaaatgttctgcatccaaagctgccatgcaccctgcatc-aaaaacaagatct |
10064212 |
T |
|
| Q |
149 |
ccatatcatttaaggata |
166 |
Q |
| |
|
|||| |||||||| |||| |
|
|
| T |
10064213 |
ccatgtcatttaaagata |
10064230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University