View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_3 (Length: 315)
Name: NF9854_low_3
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 24789710 - 24790000
Alignment:
| Q |
15 |
atcaagtgcatacttagcatggtgagacgagacaatggatgaagttgaaacattttgatatttgtcagtagaagctgtagctgcttcaattgaacgaaca |
114 |
Q |
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| T |
24789710 |
atcaagtgcatacttagcatggtgagacgagacaatggatgaagttgaaacattttgatatttgtcagtagaagctgtagctgcttcaattgaacgaaca |
24789809 |
T |
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| Q |
115 |
gcagccgttatgtcccaatgtgcattgtgcattagcgataaaagcatagatgtgaaggactttgatgcttctcttacatgcaccatagttgtttcaaata |
214 |
Q |
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| T |
24789810 |
gcagccgttatgtcccaatgtgcattgtgcattagcgataaaagcatagatgtgaaggactttgatgcttctcttacatgcaccatagttgtttcaaata |
24789909 |
T |
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| Q |
215 |
gttctggtgtaggaactgatgcaattgctacaaaaatatatttcacnnnnnnntaaaacactcagatttgaatataagatcctcaattcat |
305 |
Q |
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| T |
24789910 |
gttctggtgtaggaactgatgcaattgctacaaaaatatatttcacaaaaaaataaaacactcagatttgaatataagatcctcaattcat |
24790000 |
T |
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