View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9854_low_8 (Length: 250)
Name: NF9854_low_8
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47933534 - 47933299
Alignment:
| Q |
1 |
cctcacatcattaaaataaggtgaatttgatagtcaacttgattgccaagacgattctatcttagacttgttcaacgaagaagaagatcatctcatggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47933534 |
cctcacatcattaaaataaggtgaatttgatagtcaacttgattgcctagacgattctatcttagacttgttcaacgaagaagcagatcatctcatggag |
47933435 |
T |
|
| Q |
101 |
gcaatggccacttggtttcattcccttggaattttcggaaaaaaggtcaatttttcaaactgatcctacagaatatacgcggaagtaatgaccatcagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47933434 |
gcaatggccacttggtttcattcccttggaattttcggaaaaaaggtcaatttttcaaactgatcctacagaatatacgc-gaagtaatgaccatcagaa |
47933336 |
T |
|
| Q |
201 |
aaatacatgattcaaaccctgtaatttttcttcctct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933335 |
aaatacatgattcaaaccctgtaatttttcttcctct |
47933299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University