View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9854_low_9 (Length: 250)
Name: NF9854_low_9
Description: NF9854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9854_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 43407527 - 43407333
Alignment:
| Q |
1 |
ttgcgtcaatgcttttgcttaattgatat---at-tttagatgatcaacaggtctcctatttaatgaccaaaaatgcaatttcaatttctttatattttt |
96 |
Q |
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| T |
43407527 |
ttgcgtcaatgcttttgcttaattgatatgatatatttagatgatcaacaggtctcctatttaatgaccaaaaatgcaatttcaatttctttatattttt |
43407428 |
T |
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| Q |
97 |
agtttagttggacccactagtaagctaaagcagcgactggcctatatctatattttatatctctatattctctttcacaattagcagcgctgtaa |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407427 |
agtttagttggacccactagtaagctaaagcagcgactggcctatatctatattttatatctctatattctctttcacaattagcagcgctgtaa |
43407333 |
T |
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