View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_1 (Length: 710)
Name: NF9856_high_1
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Complemental strand, 1230473 - 1229776
Alignment:
| Q |
1 |
tactctaaaacccaatgattcgaatgaaaaa-gatctcaaaaaatgatgagatcaattcgctctgtttatacacttaaacaacctctttgtaaaaggtaa |
99 |
Q |
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| T |
1230473 |
tactctaaaacccaatgattcgaatgaaaaaagatctcaaaaaatgatgagatcaattcgctctgtttatacacttaaacaacctctttgtaaaaggtaa |
1230374 |
T |
|
| Q |
100 |
tatcagaaagagtaatatcgaatatctttatacaacaagaaaattaatctcaccaaattaaagagagtatatcgtaagtatttttcttttctatatgctc |
199 |
Q |
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| T |
1230373 |
tatcagaaagagtaatatcgaatatctttatacaacaagaaaattaatctcaccaaattaaagagagtatatcgtaagtattttccttttctatatgctc |
1230274 |
T |
|
| Q |
200 |
cattgtcatattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgtttg |
299 |
Q |
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| T |
1230273 |
cattgtcatattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgtttg |
1230174 |
T |
|
| Q |
300 |
attcattttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactcc |
399 |
Q |
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| T |
1230173 |
attcattttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactcc |
1230074 |
T |
|
| Q |
400 |
tctagaaaatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatca |
499 |
Q |
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| T |
1230073 |
tctagaaaatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatca |
1229974 |
T |
|
| Q |
500 |
acctctccatcgaagttgttgtattaatttaatggccaaaaatattatattatggtcaaccattagacttaattcaacaaatttgatgtgattagaaaga |
599 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| |
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| T |
1229973 |
atctctccatcgaagttgttgtattaatctaatggccaaaaatattatattatggtcaaccattagacttaatccaacgactttgatgtgattagaaaga |
1229874 |
T |
|
| Q |
600 |
tgtctgagtttgcggagaatcatatattataagaattttaatgaccaaaccttcttaaggatccaatatattcttcttttgattggccttccatccct |
697 |
Q |
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||| || ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1229873 |
tgttcgattttacggagaatcatatattataaggattttagtgaccaaaccttcttaaggatccgatatattcttcttttgattggccttccatccct |
1229776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 24989937 - 24989983
Alignment:
| Q |
368 |
taccttgctacacctctgtattttgagactcctctagaaaatccact |
414 |
Q |
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| T |
24989937 |
taccttgctactcctctatattttgatacacctctagaaaatccact |
24989983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 2051772 - 2051718
Alignment:
| Q |
369 |
accttgctacacctctgtattttgagactcctctagaaaatccactgctttttct |
423 |
Q |
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| T |
2051772 |
accttgcaacacctctatactttgagacacctcttgaaaagccactgctttttct |
2051718 |
T |
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