View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_10 (Length: 375)
Name: NF9856_high_10
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 41704886 - 41705247
Alignment:
| Q |
14 |
caaaggtgcaacaagggtgaagaccacttgcacactcaagtgctcgatttgtgtcaacatgacctgaattttccaagtaacggtgacaaatactagagga |
113 |
Q |
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| T |
41704886 |
caaaggtgcaacaagggtgaagaccacttgcacactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagagga |
41704985 |
T |
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| Q |
114 |
agagcagttaagaggagaaaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaa |
213 |
Q |
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| T |
41704986 |
agagcagttaagaggagaaaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaa |
41705085 |
T |
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| Q |
214 |
ataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaagacatgattcttagta |
313 |
Q |
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| T |
41705086 |
ataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaagacatgactcttagta |
41705185 |
T |
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| Q |
314 |
caacataggaactgccattgagagtgtcaaagtaaagcttttgagaatgaggatcgcaacga |
375 |
Q |
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| T |
41705186 |
caacataggaactgccattgagagtgtcaaagtaaagcttttgagaatgaggatcacaacga |
41705247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 1453265 - 1453360
Alignment:
| Q |
202 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa |
297 |
Q |
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| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccatgcgttggatcgaa |
1453360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 1464957 - 1465052
Alignment:
| Q |
202 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacaccatacgctggatcgaa |
297 |
Q |
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| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccaccatgcgttggatcgaa |
1465052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
| Q |
229 |
ggcatgtcttgtgtgacacatgaaccgggtaaccaag |
265 |
Q |
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| T |
7564110 |
ggcatgtcttgtgtaacacatgaaccaggtaaccaag |
7564146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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