View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_14 (Length: 354)
Name: NF9856_high_14
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 3218558 - 3218771
Alignment:
| Q |
49 |
ttttattcattgcatgctctgaatgcattctttttaacttccccacttgtacatatataaacaaatcaaagaagcatatgctaatgtataaatagatgtt |
148 |
Q |
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| T |
3218558 |
ttttactcattgcatgctcttaatgcattttttttaacttccccacttgtacatgtataaacaaatcaaagaagcatatgctaatgtataaatagatgtt |
3218657 |
T |
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| Q |
149 |
ctacctnnnnnnnnnnnnnnnttacatagatatgatttatgaactaatttagtaaagtaaactcaactaggatggaccatggtagtatatcatttgttga |
248 |
Q |
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| T |
3218658 |
ctacctaaaacaaataaaaaattacatagatatgatttatgaactaatttagtaaagtaaactcaactaggatggaccatggtagtatatcatttgttga |
3218757 |
T |
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| Q |
249 |
ttagtttggtatac |
262 |
Q |
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|||||||| ||||| |
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| T |
3218758 |
ttagtttgatatac |
3218771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 3236269 - 3236401
Alignment:
| Q |
11 |
catagggaaatgagctacattccaaatgttatataattttttattcattgcatgctctgaatgcattcttt---ttaacttccccacttgtacatatata |
107 |
Q |
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| T |
3236269 |
catagggaaatgagctacattccaaatgttatatatttttttattcattgcatgctctgaatgcattcttttaattaacttccccacttgtacatatata |
3236368 |
T |
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| Q |
108 |
aacaaatcaaagaagcatatgctaatgtataaa |
140 |
Q |
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| T |
3236369 |
aacaaatgaaagaagcatatgctaatgtataaa |
3236401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 3236499 - 3236551
Alignment:
| Q |
287 |
gtggataacaattaccaggttaagagtagcagcagcaatacacatgaaaaaat |
339 |
Q |
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| T |
3236499 |
gtggataacaattaccaggttaagagtagcagcagcaatacacatgaaaaaat |
3236551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 3218801 - 3218851
Alignment:
| Q |
289 |
ggataacaattaccaggttaagagtagcagcagcaatacacatgaaaaaat |
339 |
Q |
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| T |
3218801 |
ggataacaattaccaggttaagagtagcagcagcaatacacatgaaaaaat |
3218851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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