View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9856_high_18 (Length: 320)

Name: NF9856_high_18
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9856_high_18
NF9856_high_18
[»] chr2 (12 HSPs)
chr2 (1-144)||(32565381-32565524)
chr2 (1-144)||(32806566-32806709)
chr2 (1-144)||(32815003-32815146)
chr2 (1-144)||(32309311-32309454)
chr2 (1-116)||(32799640-32799755)
chr2 (9-143)||(28215614-28215748)
chr2 (204-304)||(32565218-32565318)
chr2 (1-143)||(28220468-28220607)
chr2 (204-304)||(32309516-32309616)
chr2 (204-304)||(32814841-32814941)
chr2 (102-144)||(32305344-32305386)
chr2 (246-304)||(32305422-32305480)
[»] chr6 (2 HSPs)
chr6 (1-140)||(301457-301596)
chr6 (242-304)||(301930-301992)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 32565524 - 32565381
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565524 aatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 32565425  T
Q  101 cttctcttcttcgtctcttctttcatgattgcttcatccaggta 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32565424 cttctcttcttcgtctcttctttcatgattgcttcatccaggta 32565381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 32806709 - 32806566
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32806709 aatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 32806610  T
Q  101 cttctcttcttcgtctcttctttcatgattgcttcatccaggta 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32806609 cttctcttcttcgtctcttctttcatgattgcttcatccaggta 32806566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 32815146 - 32815003
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815146 aatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 32815047  T
Q  101 cttctcttcttcgtctcttctttcatgattgcttcatccaggta 144  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  32815046 cttctcttcttcgtcttttctttcatgattgcttcatccaggta 32815003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 32309311 - 32309454
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309311 aatcttcaatataatttctatagggattcttgccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 32309410  T
Q  101 cttctcttcttcgtctcttctttcatgattgcttcatccaggta 144  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  32309411 cttctcttcttcgtcttttctttcatgattgcttcatccaggta 32309454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 32799755 - 32799640
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32799755 aatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 32799656  T
Q  101 cttctcttcttcgtct 116  Q
    ||||||||||||||||    
T  32799655 cttctcttcttcgtct 32799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 28215748 - 28215614
Alignment:
Q  9 atataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctctt 108  Q
    |||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  28215748 atataatttctataaggattcttgccctgaagctgagaatattgttcgttccgctgttaccgatatttactctgatcatagagaccttgcaccttctctt 28215649  T
Q  109 cttcgtctcttctttcatgattgcttcatccaggt 143  Q
    |||||||||||||||||||||||||||||||||||    
T  28215648 cttcgtctcttctttcatgattgcttcatccaggt 28215614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 32565318 - 32565218
Alignment:
Q  204 ctgcataggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgatttcataatggttttgattttctgttctaactacttg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32565318 ctgcataggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttg 32565219  T
Q  304 t 304  Q
    |    
T  32565218 t 32565218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 28220468 - 28220607
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| ||||||||||||||| || ||||||||||||||||||  |||||||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  28220468 aatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttactttaatcatagagacc-tgcac 28220566  T
Q  101 cttctcttcttcgtctcttctttcatgattgcttcatccaggt 143  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  28220567 cttctcttcttcgtctct--tttcatgattgcttcatccaggt 28220607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 204 - 304
Target Start/End: Original strand, 32309516 - 32309616
Alignment:
Q  204 ctgcataggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgatttcataatggttttgattttctgttctaactacttg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  32309516 ctgcataggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgctttcataatggttttgatttgttgttctaactacttg 32309615  T
Q  304 t 304  Q
    |    
T  32309616 t 32309616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 32814941 - 32814841
Alignment:
Q  204 ctgcataggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgatttcataatggttttgattttctgttctaactacttg 303  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32814941 ctgcatagcatagatctttgtttcatagtgattttatctatgtttactaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttg 32814842  T
Q  304 t 304  Q
    |    
T  32814841 t 32814841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 32305344 - 32305386
Alignment:
Q  102 ttctcttcttcgtctcttctttcatgattgcttcatccaggta 144  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32305344 ttctcttcttcgtctcttctttcatgattgcttcatccaggta 32305386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 32305422 - 32305480
Alignment:
Q  246 tttactaaatcatcttcttgatttcataatggttttgattttctgttctaactacttgt 304  Q
    |||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  32305422 tttattaaatcatcttcttgctttcataatggctttgatttgctgttctaactacttgt 32305480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 301457 - 301596
Alignment:
Q  1 aatcttgaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcac 100  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  301457 aatcttcaatataatttctatagggattctagccctcaagctgaagatattgttccttccgctgttaccgatatctaccttgatcatagagaccttgcac 301556  T
Q  101 cttctcttcttcgtctcttctttcatgattgcttcatcca 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  301557 cttctcttcttcgtctcttctttcatgattgcttcatcca 301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 301930 - 301992
Alignment:
Q  242 tatgtttactaaatcatcttcttgatttcataatggttttgattttctgttctaactacttgt 304  Q
    |||||||||  ||||||||||||| |||||||||||||||||||| || ||||||| ||||||    
T  301930 tatgtttaccgaatcatcttcttgctttcataatggttttgatttgcttttctaacaacttgt 301992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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