View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_20 (Length: 273)
Name: NF9856_high_20
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 43560904 - 43561149
Alignment:
| Q |
18 |
aatattacctgagtgagtgtttgtgtcatttaaacgttttcaaaagtggtggtagaaaaatattgttatgttgtgtgtggggtgaagagggagagtaact |
117 |
Q |
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| T |
43560904 |
aatattacctgagtgagtgtttgtgtcatttaaacgttttcaaaagtggtggtagaaaaatattgttatgttgtgtgtggggtgaagagggagagtaact |
43561003 |
T |
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| Q |
118 |
caaactaattgtgttcatttaannnnnnnnnnnnnnnnnnncctaaatcattaatcatacttaggattgaagttannnnnnnnnnnnnnnnnnnnnacat |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
43561004 |
caaactaattgtgttcatttaaagagagaaagagagagagacctaaatcattaatcatacttaggattgaagtta--agagagagagaaagagagaacat |
43561101 |
T |
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| Q |
218 |
tgagaggaaggtgctgcaatcaagtgggttttacgcaattcctatgct |
265 |
Q |
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| T |
43561102 |
tgagaggaaggtgctgcaatcaagtgggttttacgcaattcctatgct |
43561149 |
T |
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