View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9856_high_27 (Length: 250)
Name: NF9856_high_27
Description: NF9856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9856_high_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 27394031 - 27393780
Alignment:
| Q |
5 |
gagaagcaaagggtagtatagccaatggtactgggtcccaccatgtcctttgtactcacaatacactaaccccaatacacccgtggtctgtcttttccat |
104 |
Q |
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| T |
27394031 |
gagaaacaaagagtagtatagccaatggtactgggtcccaccatgtcctttgtactcacaatacactaaccccaatacacccgtggtctgtcttttccat |
27393932 |
T |
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| Q |
105 |
tgtccctacactccacatggtccctctattctatcttcccaaaaactctccataaatacannnnnnnnaaatactacttcatcatcaacacattcttca- |
203 |
Q |
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| T |
27393931 |
tgtccctacactccacatggtccctctattctatcttcccaaaaactctccataaataca-cccccccaaatactacttcatcatcaacacattcttcat |
27393833 |
T |
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| Q |
204 |
------tcaccatattcaccactacttcttctcaatctcatcttttactaaac |
250 |
Q |
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| T |
27393832 |
caccattcaccatattcaccactacttcttctcaatctcatcttttactaaac |
27393780 |
T |
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